Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02340 ATGGCAGATGAAAATTTTATTGTAGGTGCCAGTACGAGTGAAGTTGCCGGTGAAAGTTCAGAATCAACTGTTGAGGTCAATGTCAAGACCCTGGATTCACAGATATACACATTTCGGATCAACAAAAAGATGCCAGTTCCATTGTTCAAGGAGAAAATAGCAGATGCAATTGGTGTTCCAGTTGGGCAACAACGACTAATTTTTAGGGGAAAGGTCTTAAAAGATGATCACCTCCTTTCTGAATATCATGTGGAAGATGGCCATACACTGCATTTAGTTGCGAGGCAGCCGGTCCAATCACAAACTTCAACTGAAACAAACTCTGGAGAGACCAATGGAAATAATGGTAACCGAGGAAATGATGCTGGTGCTGGTGCCCCACGTAACAGGGTGGGTCAAGTTTCACACAGTGTAGTTCTTGGAACCTTCAATGTTGGGGACCAAAGTGAAGGCTTTGTTCCTGACCTTACTCGCATTATTGGGACAGTTCTCAGTTCTATTGGAATTGGGAACCAGATTTCTACAGGTGGGGCTAGCAACATATCATCCAGTATACCTTCCAATGCTTCTAGTCAGGCCTCCCAAGGTGTTGAAACAGAAGGAACACATGGGAATGTTGGTGGCAGGAGCCAGGCAGGGAATCAAGTGCAACCTGGACAGACCTTTCCCAATCTCCCATTCCAATCTCTGCCTCAGTCCTTGCAATTCCCTTTGGCAGGGGCAACAATAGCTGTTCCCTCTCATCAAGTGCCTATTCCTAATTCTTTGAGCACACTTTCTGAGTTCATAAACCGCATGGAGCTGGCTTTGTCAGTCAATGGGTATCAGCCATCTCCACCTACAAATGTTGGAGATCCACCGAGAGTGGATTTGCCATCTAATGCACGCGGACTGCCAACACCTGAAGCGCTAAGCATCATTATGCGACAAGCACAGCAACTTCTCAGTGGCCATGCTGTAGCTGCACTTTCTCATATTGCAGGACGTTTGGAAGAAGAGGGAGGTTCTACTGATCCTGCAGTACGGAGCCAAATTCAGACCGAATCAGTGCAAGTAGGGCTAGCAATGCAACATTTAGGTGCCCTTCTTTTAGAGCTTGGTCGCACAATTCTGACACTTCGTATGGGGCAGTCTCCTGCTGAATCTTTGGTTAATGCTGGTCCTGCAGTTTATATATCTCCATCAGGGCCAAATCCTATAATGGTTCAGCCCTTTCCTCTCCAAACCAGCTCCCTCTTTGGTGGTCCTGCTGTTCCTTCGGCAAATCCTGGAACTCTGCGTCCTGTTGGTGGTCGTGGAGATGCCCCCAGAAACATAAATATTCATATACATGCTGGGACCTCTCTTGACCCCGGTTTATCATCAGTTGGTTCTAGGGCAACGGGTCCTGCACAAGGTTCTGGTGTGGCGGTATCCAGCACTGCACTACCCAGTCAAGGTAATTCTGTTCTGCAACAACCTTCTGAATCTGTTTCCATCCCCACAGTTGTAGCTGAAATCAATGCACGGATTGGAAACCTTGTTGATAATTTGCGGGGGGGAAATCAGATTCCATCAGGCCAATCAGAGGGTTCAACTCTTCAGGGTTCGTCCACTGGATCTTGCACTGGTGCGGATGTAGAGAACCATCAGCTTGAAAGCATGGCAGTTAATGGAGCTGGCGAGACCGGTGGTTCCTTACCTGATTGTGTTTCTGAAAGGGAAGGGCAGCGAGTATGTTTTAGACATCCCCTCATGAGAGTTATTGGTTCCTACCAGCAGCAATCTGAATGCGGTCAATTTAGTAACAATGATGAAACAAATGGTAGTTTGAGTTCAAAAGAAGCATCATCAACTAGCTCAATGGGAGGCTCTTCAAGCTGCCCAAGTGGAGAAACAACACTTCCCTGCAATTCAGAAGTTGCTTCAGAGGATGCTCCGAGATCCAGTCAGAGCCATGATCCCCCTGTGGGTGACAAAGCTGTTCCGTTGGGATTAGGGCTAGGAGGTCTGCAAGCAAGGAGGCAAAGCAGACGGGCTAGGTCGCAAGGGAAGAATGGTGCTGGAACATGCAGTGCCCTTCCTGTCAATCAGAACCAACAATCCATTGCTAATGGCCAGCAGATTTTGCAATCTCTTGTGTCTCGTGGCTCTGATGCAAATAGGACAGATTCAAATGGTCCCCCCTCAGGGCAACTGCCTCCTGTATTTGGGCAGACTATGGAGAGTATGCCATCTGGAACGCAAGGTTTTGATGGTCAATTTGATGCAGCAAGCATGATGTCTCAAGTTCTCCACAGTCCTGCTTTAAATAGTCTATTGACTGGAGTATCGGAACAAGCAGGGATTGGTTCCCCTGACGGGTTGAGAAACATGTTGGAACAGTTTTCACAGAGCCCTTTAATGAGGAATACACTTAATCAGATTGCCCAACAGATGGATGGCCAAGATCTTGGCAATATATTTTCAGGGATGGGAAGGGACCAAGGTGGTGGCATGGATTTATCAAGAATGGTTCAACAAATGATGCCCATTGTATCCCAAGCTCTCACCAGGGGGCCGACCTGCCCTGAACCACCTTCCCATGGTGTGGAACCTGAACCCCTGCAACAGTGTAATGAGAGTAGGTCCGTCAGAGATGACAAACCAAATGATCAAAATTCTCAGATTGACCTTCAACAAGCTGCCCAGAGGATCGAATGCCATGATCCACCTGGAGGTATTTTCTGCAGAGTAGTTGAAAATGCTGCCCGTTTGTATGGCGAAGGAAGTGGTTCTGAAGATCTCGTTGAAGAATTGCGCAGCGATGAGGATCTTGCCAATGAATTCATGGAGATGCTACACCGTAACATACGTCGACGGCTCCAGGCGGATTCTGGGTCCACAGATTGA 2871 0.4758 MADENFIVGASTSEVAGESSESTVEVNVKTLDSQIYTFRINKKMPVPLFKEKIADAIGVPVGQQRLIFRGKVLKDDHLLSEYHVEDGHTLHLVARQPVQSQTSTETNSGETNGNNGNRGNDAGAGAPRNRVGQVSHSVVLGTFNVGDQSEGFVPDLTRIIGTVLSSIGIGNQISTGGASNISSSIPSNASSQASQGVETEGTHGNVGGRSQAGNQVQPGQTFPNLPFQSLPQSLQFPLAGATIAVPSHQVPIPNSLSTLSEFINRMELALSVNGYQPSPPTNVGDPPRVDLPSNARGLPTPEALSIIMRQAQQLLSGHAVAALSHIAGRLEEEGGSTDPAVRSQIQTESVQVGLAMQHLGALLLELGRTILTLRMGQSPAESLVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPAVPSANPGTLRPVGGRGDAPRNINIHIHAGTSLDPGLSSVGSRATGPAQGSGVAVSSTALPSQGNSVLQQPSESVSIPTVVAEINARIGNLVDNLRGGNQIPSGQSEGSTLQGSSTGSCTGADVENHQLESMAVNGAGETGGSLPDCVSEREGQRVCFRHPLMRVIGSYQQQSECGQFSNNDETNGSLSSKEASSTSSMGGSSSCPSGETTLPCNSEVASEDAPRSSQSHDPPVGDKAVPLGLGLGGLQARRQSRRARSQGKNGAGTCSALPVNQNQQSIANGQQILQSLVSRGSDANRTDSNGPPSGQLPPVFGQTMESMPSGTQGFDGQFDAASMMSQVLHSPALNSLLTGVSEQAGIGSPDGLRNMLEQFSQSPLMRNTLNQIAQQMDGQDLGNIFSGMGRDQGGGMDLSRMVQQMMPIVSQALTRGPTCPEPPSHGVEPEPLQQCNESRSVRDDKPNDQNSQIDLQQAAQRIECHDPPGGIFCRVVENAARLYGEGSGSEDLVEELRSDEDLANEFMEMLHRNIRRRLQADSGSTD* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02340 956 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 955 - -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 451 487 - -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 591 686 - -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 450 487 - -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 94 130 - -
Eupl03g02340 956 Gene3D - 12 109 - -
Eupl03g02340 956 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 180 226 - -
Eupl03g02340 956 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Eupl03g02340 956 ProSiteProfiles Ubiquitin domain profile. 24 97 IPR000626 GO:0005515
Eupl03g02340 956 SMART ubq_7 24 95 IPR000626 GO:0005515
Eupl03g02340 956 FunFam Large proline-rich protein BAG6 16 109 - -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 843 862 - -
Eupl03g02340 956 SUPERFAMILY Ubiquitin-like 19 96 IPR029071 -
Eupl03g02340 956 PRINTS Ubiquitin signature 76 97 IPR019956 -
Eupl03g02340 956 PRINTS Ubiquitin signature 55 75 IPR019956 -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 710 745 - -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 94 119 - -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 514 538 - -
Eupl03g02340 956 MobiDBLite consensus disorder prediction 591 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02340 Eupl-Chr3 54659343 54673196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02340 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 2.87e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02340 - - nnu:104603706 1006.51