Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02314 ATGATGTCGGAGGAAGAGAAAATTACGGGAAAGCCACCAGGAAGGGGAGTGGAGGATAAGCGCTATCCTGCGCCGGTCGCTTCTCATGAAGAGGTTGTTAGCAATCCCTCGGTTTTCATGGACACTCTCAGGCTCTTTCATTCTGTGATGGGTACCAGATTCATGATACCGGTGATTGGAGGGAAAGAACTGGATTTGCATCTTCTGTATGTCGAAGTTACCAAAAGGGGTGGTTTTCAGAAGGTGGTTGGAGCGAAGAAATGGAGGGATGTGGGTACAGTTTTCAAGTTCTCTCCGACAGCAACAAGCGCTTCTTATGTGTTGAGGAAACACTACTTGAGTCTTCTTCACCATTACGAGCAGGTTTACTTCTTTAAGTTACAGGGTCCATTGCTAACTCCAACAGTGGCATTGCCTGTCAAGGGTTCTTCATGCAGACCTGCAAGGCCTGAGCTTATGGAATCTGCTACTGACTCCATGCAACAACAGATACCCCAGAAGTGGACAAGAAGTTCTTCCAATTTGCAAATCGCAGCTCCTACATTTTCTCAAGTGATGGGAACAATAGACGGAAAATTTGACTGCGGTTACTTGGTGACGGTGAAGTTGGGTTCAGAAATCCTTCGTGGCGTACTCTACCATCCACCACTATTGGGATCTTCTTCCCCTTTAACCCAACCCAACAATGCCATCGTCCCTTACCACACCCCTCCTCGCCCATATGGTAGGAAGAGGAGACGACGAAGATCCGGCAGGGAGCCCGGACACCCAGTACCCAACCGGAGCGGTTACAACTTTTTCTTTTCTGAAAAGCATTCCAAGCTCAAATCCCTCTACCCATTCAGAGAAAGAGAGTTCACCAAAATGATCGGAGAGTCCTGGAGTAAACTCAGCGAAGAAGAGAGGATGGTTTATCAGAACATTGGGTTGAAGGATAAGGAGAGATACAAGAGAGAATTAAAGGAATATAAGGAAAGATTGAAGGTTTTGCAGACCATGGAAACACAACCAAGGAAGAATGATATTTAG 1029 0.4645 MMSEEEKITGKPPGRGVEDKRYPAPVASHEEVVSNPSVFMDTLRLFHSVMGTRFMIPVIGGKELDLHLLYVEVTKRGGFQKVVGAKKWRDVGTVFKFSPTATSASYVLRKHYLSLLHHYEQVYFFKLQGPLLTPTVALPVKGSSCRPARPELMESATDSMQQQIPQKWTRSSSNLQIAAPTFSQVMGTIDGKFDCGYLVTVKLGSEILRGVLYHPPLLGSSSPLTQPNNAIVPYHTPPRPYGRKRRRRRSGREPGHPVPNRSGYNFFFSEKHSKLKSLYPFREREFTKMIGESWSKLSEEERMVYQNIGLKDKERYKRELKEYKERLKVLQTMETQPRKNDI* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02314 342 CDD HMG-box_AtHMGB9-like 257 323 - -
Eupl03g02314 342 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 257 324 IPR009071 -
Eupl03g02314 342 MobiDBLite consensus disorder prediction 224 261 - -
Eupl03g02314 342 Pfam ARID/BRIGHT DNA binding domain 39 120 IPR001606 GO:0003677
Eupl03g02314 342 Gene3D - 27 130 IPR036431 GO:0003677
Eupl03g02314 342 CDD ARID_HMGB9-like 35 120 IPR045303 GO:0003677
Eupl03g02314 342 SMART bright_3 34 125 IPR001606 GO:0003677
Eupl03g02314 342 SUPERFAMILY ARID-like 28 131 IPR036431 GO:0003677
Eupl03g02314 342 ProSiteProfiles ARID domain profile. 33 124 IPR001606 GO:0003677
Eupl03g02314 342 MobiDBLite consensus disorder prediction 1 21 - -
Eupl03g02314 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 334 - -
Eupl03g02314 342 Pfam HMG (high mobility group) box 260 324 IPR009071 -
Eupl03g02314 342 SMART hmgende2 256 325 IPR009071 -
Eupl03g02314 342 SUPERFAMILY HMG-box 254 327 IPR036910 -
Eupl03g02314 342 Coils Coil 313 333 - -
Eupl03g02314 342 SMART ARID_2 30 120 - -
Eupl03g02314 342 Gene3D High mobility group box domain 241 337 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02314 Eupl-Chr3 54312809 54317168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02314 20 329 ARID Transcription Factor Family AT1G76110 60.383 8.65e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl03g02314 ARID 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02314 - - tss:122660598 435.647