Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02301 ATGCCCTTGTATGTAGCTGCATCACATTCCCAGGCTGTAACCTTTTCAGGTTCATTTTTTTCTATACATTATTTATGTTATATTACTGAATGTATCAGGTATTCACGATCTCCTTCGCCTAGAGCTCGTTCCAGATCCAGGTCCATGTCCAGATCCAGGTCCAGGTCCAGGTCTAGGCCAAGATCAAGGGTGTGGTCTCGATCCCGATCTAGATCCAGGTCTGGAAGTCGTGGCAGGAATGCTTCAAATCCTGGAAATACACTCTATGTGACTGGACTGTCTACTAGGGTCACAGAAAGGGACCTTGAGGATCACTTCTCCAAGGAGGGAAAGGTATCCTCATGTCATCTGGTTGTGGAGCCTCGAACACGCATCTCCCGAGGTTTTGCATTTGTGACCATGGACACTTACGAGGATGCTGAACGTTGCATCAAACATCTCAACCAGTCAGTTCTGGAAGGCCGGTACATAACTGTGGAGAAGTCAAGGAGGAAACGGCCGAGGACACCTACACCTGGAAATTATCTTGGAGTGAAAAGCACCAGAGAGACTGGCCATCGTGGAGATCGTGGAAGGTACCGTGGTGGCTATGGCCGTGATGACTATGGGTCCCGGAGGTCTCCGAGGCACTCACCTTATCGAGGGGGCCGTGATTATTCTCCGAGACGCTCACCTTATGGTGGTAGGTCAAGAAAAGAACGGTCTAGGTCACATTCTTATTCTCCTTACGATAGCCCTGGAAGGAGCTATGGGCGTCGTCCTAATGCCTATTCGAGGTAA 780 0.4949 MPLYVAASHSQAVTFSGSFFSIHYLCYITECIRYSRSPSPRARSRSRSMSRSRSRSRSRPRSRVWSRSRSRSRSGSRGRNASNPGNTLYVTGLSTRVTERDLEDHFSKEGKVSSCHLVVEPRTRISRGFAFVTMDTYEDAERCIKHLNQSVLEGRYITVEKSRRKRPRTPTPGNYLGVKSTRETGHRGDRGRYRGGYGRDDYGSRRSPRHSPYRGGRDYSPRRSPYGGRSRKERSRSHSYSPYDSPGRSYGRRPNAYSR* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02301 259 MobiDBLite consensus disorder prediction 224 239 - -
Eupl03g02301 259 SMART rrm1_1 87 160 IPR000504 GO:0003723
Eupl03g02301 259 SUPERFAMILY RNA-binding domain, RBD 82 196 IPR035979 GO:0003676
Eupl03g02301 259 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 80 240 - -
Eupl03g02301 259 MobiDBLite consensus disorder prediction 182 217 - -
Eupl03g02301 259 MobiDBLite consensus disorder prediction 158 259 - -
Eupl03g02301 259 MobiDBLite consensus disorder prediction 46 74 - -
Eupl03g02301 259 MobiDBLite consensus disorder prediction 37 89 - -
Eupl03g02301 259 MobiDBLite consensus disorder prediction 75 89 - -
Eupl03g02301 259 CDD RRM_SF 88 160 - -
Eupl03g02301 259 Gene3D - 33 171 IPR012677 -
Eupl03g02301 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Eupl03g02301 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02301 Eupl-Chr3 54174921 54181613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02301 85 171 Eukaryotic Initiation Factors Gene Family AT1G49760 31.034 1.14e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02301 K12897 - nnu:104604387 286.574