Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02267 ATGGACTTCGACGAATACGATTATTTAGAGAAAACAGTTGAAAATCCGGAACCGCCGAAAGGGAAGATAACGGCGAAGAGTGGCGATGACGGTGTTAAATCAGGGAAAAAAGACCGGAAGAGTTCCAGGCGCAGGAATGACGAGAACGAAGATGATTTGGATAACCGGTCGAAGCGGGCGAGATCTACAGACGATACTCGAGACCACAACAGGCATGAAGAGAGGAGTTCCTCACGTCACCGTTCGTCTCTCGATCACCAGTCGAGAGACGGGGAGCAGATCGAGAAGGACCGGCACAGAAGCAGCAGAGAACACACAGATAGAGATAAAAATAGAGATAGGGATAGGGATAGGGACAGGGATAGGCGAAATGGGAAGGAGAGAGACCATGATCGTAATGCGATAAAAGAGCGGGACCGAGAAAGTGAGTGGGAGAGGGAGAGAGAACGGGAGCGATCACAACGTAGCAAGAGCCGCCCCGAAAGGCACCTCATCGACCGCGAGAAGGCTCCTGAACCCGATAGGGACATAGAGAGGAGCAGAGAGACGGAGTACAGAGAAAAAGAAAGGGAGTTAAGAGACAGAAATCGAGATGGCAGACGATATAAAGAGAAAAAGGAAGATGTGTCAGAGCTAGAGGCTGATCCAGAACGAGATCAACGGACTGTATTTGCTTATCAGATTTGTTTGAAGGCTGATGAAAGAGATGTGTACGAATTTTTTTCTAGGGCTGGCAAGGTGCGAGATGTACGGCTGATAATGGATCGCAATTCAAGACGTTCCAAGGGAGTGGGGTATATTGAGTTTTATGATGTTATGTCAGTCCCTATGGCAATAGCACTCTCTGGTCAGCTGCTTTTTGGCCAACCAGTGATGATTAAACCTTCCGAGGCTGAAAAGAATCTGGTTCAATCAAATACAGCTGTAGCCGGAGCAGGTGGTCATACTGGACCCTATTCAGGGGGAGCTAGAAAGTTGTATGTCGGCAATCTGCACTTCAACATCACAGAAGATCAACTTCGTCAGGTGTTTGAACCATTTGGTTCTGTAGAGTTGGTGCAATTGCCTCTTGACGAGACTGGGCAATGCAAAGGTTTTGGTTTTGTCCAATTTGCACGTCTTGAAGATGCTAGAGCTGCTCAAAGTTTAAATGGACAATTAGACATTGCTGGGCGGATAATCAAGGTATCAGCTGTTTCTGATCAAATTGGAATGCAAGATGTTGGGGCAAATGCTGTTGATTTTGACGATGATGATGGTGGAAGCTTGTCTTTGAATGCTCATTCCAGAGCCATTCTCATGCAGAAGTTGGACCGAAGTGGCACCGCATCAAGGTTTGCAGGCTTGTATATTGTGTATTTTATTTGTCTAATTGCACTGAGTTTAACCTCTGCCTTCTTTATCTGCAGCATTGCTGGTTCACTTGGCACTTCTGTTGTCAATGGACCTTCCCTTACTCTGCCAACAGCACCAGTCTTTGGTGTTGCACCTGTGGTTTCCCCCATGGTTGCTCCACTTGGACAGGCTTCCGTGTCTGCACTTGCAGGATTGCCAGGTTCTGGCCTTCCATTCGCCACTGTAACTGTGCCTCCTATTGATACCATTGGTGTTCCTAGTGAATGCTTATTGCTGAAGAATATGTTTGATCTGAATTTAGAGACTGAACCAGATTTTGATTTGGATATTAAGAAGACATTCAAGATGAGTGTTCGAAGTTCGGCATTGTGA 1728 0.4647 MDFDEYDYLEKTVENPEPPKGKITAKSGDDGVKSGKKDRKSSRRRNDENEDDLDNRSKRARSTDDTRDHNRHEERSSSRHRSSLDHQSRDGEQIEKDRHRSSREHTDRDKNRDRDRDRDRDRRNGKERDHDRNAIKERDRESEWERERERERSQRSKSRPERHLIDREKAPEPDRDIERSRETEYREKERELRDRNRDGRRYKEKKEDVSELEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLFGQPVMIKPSEAEKNLVQSNTAVAGAGGHTGPYSGGARKLYVGNLHFNITEDQLRQVFEPFGSVELVQLPLDETGQCKGFGFVQFARLEDARAAQSLNGQLDIAGRIIKVSAVSDQIGMQDVGANAVDFDDDDGGSLSLNAHSRAILMQKLDRSGTASRFAGLYIVYFICLIALSLTSAFFICSIAGSLGTSVVNGPSLTLPTAPVFGVAPVVSPMVAPLGQASVSALAGLPGSGLPFATVTVPPIDTIGVPSECLLLKNMFDLNLETEPDFDLDIKKTFKMSVRSSAL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02267 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 565 IPR006509 GO:0003723|GO:0005634|GO:0006397
Eupl03g02267 575 CDD RRM1_RBM39_like 222 294 - -
Eupl03g02267 575 SUPERFAMILY RNA-binding domain, RBD 322 404 IPR035979 GO:0003676
Eupl03g02267 575 SUPERFAMILY RNA-binding domain, RBD 215 322 IPR035979 GO:0003676
Eupl03g02267 575 CDD RRM2_RBM23_RBM39 326 402 - -
Eupl03g02267 575 SMART rrm1_1 222 294 IPR000504 GO:0003723
Eupl03g02267 575 SMART rrm1_1 325 397 IPR000504 GO:0003723
Eupl03g02267 575 FunFam RNA-binding protein 39 isoform X1 214 306 - -
Eupl03g02267 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Eupl03g02267 575 NCBIfam splicing factor, CC1-like family 108 444 IPR006509 GO:0003723|GO:0005634|GO:0006397
Eupl03g02267 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 415 558 IPR029123 -
Eupl03g02267 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 392 IPR000504 GO:0003723
Eupl03g02267 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 290 IPR000504 GO:0003723
Eupl03g02267 575 Gene3D - 159 308 IPR012677 -
Eupl03g02267 575 Gene3D - 319 408 IPR012677 -
Eupl03g02267 575 MobiDBLite consensus disorder prediction 1 215 - -
Eupl03g02267 575 FunFam CC1-like, splicing factor 319 427 - -
Eupl03g02267 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02267 Eupl-Chr3 53535317 53552848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02267 306 396 Eukaryotic Initiation Factors Gene Family AT4G34110 38.710 1.41e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02267 K13091 - nnu:104603657 688.337