Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02224 ATGGAAGAAGTGGAGCTCCGCACTATCCGAGTTCCAGAAGAGAACCCACCTCAGAAACCAGGCCCACCGTTGAGCTCGAACCCGAAACCAAATGTTCCGTTCTTTGGCATGTTTGCTTTCGCCGACATGACCGACTGTTTCTTGATGTTCTTCGGAAGCATTGGGGCCTGCATCCATGGAGCCGCACTCCCTTTGTTCTTCGTGTTCTTTAGCCATATGATCGACTCTTTGGGCTCTCTGTCTCATGATCATCAGAGATTGTCATCTGAAGTCTCAAAGCAAGCTTTGAACTTAGTTTATTTAGGACTTGCTGTCTTGGTCTCAGCATGGATGGGGGTAGCTTGTTGGATGCAGACTGGGGAGAGACAGACAGCCCGTTTGCGGGTGAAGTATCTTCAATCGGTCTTGAAACGAGATATTAACTTCTTTGACACAGAAGCAAGGGATGAAAATATCATTTTCCACATCTCGAGTGATGCAATTCTTGTGCAGGATGCAATAGGTGACAAGATAGGACATTGTTTGCGATACCTTGCTCAGTTCTTCTCTGGGTTTGCCGTAGGATTTATATCAGTATGGCAGCTTACACTTCTCACTCTTGCTGTCATACCGTTGATGGTTATTGCGGGAGGTATGTATACAATAATCATGTCTAGTTTGTCAAAGAAGGGTGAGGCTGCATATGCTGAAGCTGGGAAGGTCGCAGAAGAGGTTATTTCACAGGTTCGTTCTGTGTACTCATTTGTGGGGGAGGACAAAGCAGTCGAAGCATACTCAAGGTCACTTAGAAATGCCCTGAAGTTGGGGAAGAAGAGTGGGTTTGCAAAAGGAATCGGCGTTGGCTGTACATATTGGCTGTTGTTTTGTGCTTGGGCATTCCTTCTCTGGTACTCCAGCATCCTTGTTAGGCACCGTGTCACCAGTGGTGGTAAAGCATTTACGACAATTATCAACGCTATCATGAGTGGATTTGCTCTTGGCCAAGCTGCTCCCAACCTTGGTGCCATTGCTAAAGGTCGGGCCGCTGCAAGCAATATCATCAGCATGATTGAAACAGATGCCAACTCTTCTAAAGGGTCAGACAGTGGAATAATTTTGCCCAAAGTAGATGGGAAAATTGAATTCTGTGAGGTCTCTTTCTCCTACCCCTCGCGATCCAATATGATCTTTGAAGCTCTGAGCTTTTCACTTAGTGCTGGAAAAACCTTTGCACTTGTTGGTCCCAGTGGGTCAGGAAAGAGCACTATTATTTCCATGGTTGAACGATTTTATGACCCCACATCAGGTAATATACTGTTGGATGGGCACAACCTGAAGAGTCTCAAATTAAAGTGGCTTCGAGAACAGATGGGACTTGTTAGCCAAGAACCAGCATTGTTTGCGACCACCATAGCTGGGAATATTCTATATGGTAGAGAAGGTGCAAACATGGAGCAGATTATGGAAGCTGCAAAAGCTGCAAATGCACACTCTTTCATACAAAGTTTGCCTGATGGTTATAATACCCAGGTGGGAGAGGGGGGAACTCAGCTTTCTGGAGGACAGAAACAAAGAATTGCCATTGCAAGGGCAGTGCTGAGAAACCCGAAGATTCTACTTCTAGATGAGGCCACAAGTGCTCTTGATGCAGAATCCGAACTCATTGTTCAGCAGACACTCAATACGATCATGTTGCACCGGACAACAATCATTGTTGCACACAGGTTATCCACAATTCGTGGTGTCGATACAATCATCGTTTTGAAGAACGGACAGGTTGTCGAAAGTGGAAGCCATTTGGAACTGATGTCCAAGGGAGGAGATGGAGAGTATGCTACTCTAGTGAGCTTCCAAATACCGTCAAATATCAAACATCCAAGCAAGGAAGATTTTAGTGAATATTCTGGAACTTTCATCTTTTCAGAAAAAACCAACAGTCAAATACATCATCAGAAGGCCATGTCAATTGATGCAAATGAGCTTCAGATGAACAACCAGCAGTTGGCCCCATGTAACTCCATCTCATCACCGTCGATTTGGAAACTAGTTAGACTGAACGCACCAGAGTGGCCGTTCGCAGTACTTGGGTCAGTGGGTGCTGTTCTGGCAGGCATGGAAGCTCCTTTGTTTGCACTTGGAATCACACATATCCTGAATGTATACTACTCTCATGATGAATCACGGATCAAGCATGAGGTTCAAAAGATCTCTCTCATATTTGTTGGAGTGGCAGTTGTTACAGTGCCTATATATCTGTTACAGCACTACTTTTATACTTTGATGGGAGAGCGTCTTACAACTCGCGTTCGCCTCTTCATGTTCTCAGCTATCCTTTGCAATGAGATTGGCTGGTTCGATTTGGATGAGAATAGCACTGGATCCCTGATATCAAATTTAGCAGTGGATGCGACCTTAGTAAGAAGTGCACTTGCTGACCGTCTGTCAACAATCGTGCAAAATGTAGCACTCACTGTAACAGCATTTGTTATTGCATTTACACTCAGTTGGCGCCTGGCGTTGGTTATTGTTGCTGCATTCCCCCTTCTCATCGGAGCCTCCGTGGCTGAGCAACTGTTTCTGAAGGGATTTGGAGGAGACTACGCTCATGCTTACTCTCGAGCTACTTCCCTGGCCCGTGAAGCAATCACCAACATCCGTACCGTGGCTGCATTAGGTGCTGAGGACCGGATCTCAGCTCAGTTTTCCCACGAATTAAACCGGCCAAACAAACAAGCACTTCTACGCGGGCATATATCAGGTCTCGGCTTTGGTGTATCTCAGCTCTTTGCATTCTGTTCCTACGCACTTGGCCTTTGGTATGCATCAATACTTATCAAGCAACAATATTCAAACTTTGGAGATATCATCAAGTCCTTCATGGTGTTGATCATCACTGCTTTGGCAGTAGCAGAGACACTTGCTCTTGCACCTGACATCGTAAAGGGAACACAGGCACTTCAATCAGTATTTAGTATTCTTGAAAGAAGAACAGCCATAGATTCCAACAATCCAACGTCAGAAGTGGTAACAGAAATCAAGGGAGATATAGAATTCAGGAATGTGAGCTTCAAGTACCCCTCAAGGCCTGGCATTGTTGTCTTAAAGGACCTGAATTTACAAGTGTCAGCAGGAAGCAGCCTCGCAATAGTGGGCCAAAGTGGGTCTGGGAAGAGCTCCGTGATTGCGCTAATAATGAGATTCTATGACCCCACCTCAGGTGTAATTTTGATTGATGGACGTGACATTAGAGGTTTAAACTTGAGATCCTTGAGGCTGAAAATCGGACTAGTTCAACAGGAGCCGGCATTGTTCTCTACTACAATTTATGAAAACATCCAGTATGGGAAGGACGGTGCTTCAGAGATCGAGATCATGAAGGCCGCAAAAGCAGCAAATGCTCATGGGTTCATCAGTAGAATGCCCGACGGATACCAGACCCAAGTGGGTGAACGGGGAGTGCAGCTATCAGGGGGTCAGAAACAGAGGGTGGCAATTGCCCGAGCGATATTAAAAGACCCAACAATTCTTCTTTTAGACGAAGCCACCAGTGCATTGGACACGGCCTCGGAGAAGTTAGTTCAAGAAGCTCTTGATAAGCTAATGGAAGGTCGAACAACTATCATAGTGGCACACAGGTTGTCAACCATACGCGACGCTAACAAAATCTCTGTGTTGCAACATGGGAAGGTGGTGGAAACAGGTAGCCATGATGAGCTCATCAGTAGGCCTGGTAGTGCCTATATGCAGCTAGTTAACCTACAACAGGAAACTAATAATGAAGTTCTTTGCTGA 3771 0.4558 MEEVELRTIRVPEENPPQKPGPPLSSNPKPNVPFFGMFAFADMTDCFLMFFGSIGACIHGAALPLFFVFFSHMIDSLGSLSHDHQRLSSEVSKQALNLVYLGLAVLVSAWMGVACWMQTGERQTARLRVKYLQSVLKRDINFFDTEARDENIIFHISSDAILVQDAIGDKIGHCLRYLAQFFSGFAVGFISVWQLTLLTLAVIPLMVIAGGMYTIIMSSLSKKGEAAYAEAGKVAEEVISQVRSVYSFVGEDKAVEAYSRSLRNALKLGKKSGFAKGIGVGCTYWLLFCAWAFLLWYSSILVRHRVTSGGKAFTTIINAIMSGFALGQAAPNLGAIAKGRAAASNIISMIETDANSSKGSDSGIILPKVDGKIEFCEVSFSYPSRSNMIFEALSFSLSAGKTFALVGPSGSGKSTIISMVERFYDPTSGNILLDGHNLKSLKLKWLREQMGLVSQEPALFATTIAGNILYGREGANMEQIMEAAKAANAHSFIQSLPDGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQTLNTIMLHRTTIIVAHRLSTIRGVDTIIVLKNGQVVESGSHLELMSKGGDGEYATLVSFQIPSNIKHPSKEDFSEYSGTFIFSEKTNSQIHHQKAMSIDANELQMNNQQLAPCNSISSPSIWKLVRLNAPEWPFAVLGSVGAVLAGMEAPLFALGITHILNVYYSHDESRIKHEVQKISLIFVGVAVVTVPIYLLQHYFYTLMGERLTTRVRLFMFSAILCNEIGWFDLDENSTGSLISNLAVDATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWRLALVIVAAFPLLIGASVAEQLFLKGFGGDYAHAYSRATSLAREAITNIRTVAALGAEDRISAQFSHELNRPNKQALLRGHISGLGFGVSQLFAFCSYALGLWYASILIKQQYSNFGDIIKSFMVLIITALAVAETLALAPDIVKGTQALQSVFSILERRTAIDSNNPTSEVVTEIKGDIEFRNVSFKYPSRPGIVVLKDLNLQVSAGSSLAIVGQSGSGKSSVIALIMRFYDPTSGVILIDGRDIRGLNLRSLRLKIGLVQQEPALFSTTIYENIQYGKDGASEIEIMKAAKAANAHGFISRMPDGYQTQVGERGVQLSGGQKQRVAIARAILKDPTILLLDEATSALDTASEKLVQEALDKLMEGRTTIIVAHRLSTIRDANKISVLQHGKVVETGSHDELISRPGSAYMQLVNLQQETNNEVLC* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02224 1256 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Eupl03g02224 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 611 IPR027417 -
Eupl03g02224 1256 Gene3D ABC transporter type 1, transmembrane domain 36 978 IPR036640 GO:0005524|GO:0016020
Eupl03g02224 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl03g02224 1256 Pfam ABC transporter 1027 1176 IPR003439 GO:0005524
Eupl03g02224 1256 SUPERFAMILY ABC transporter transmembrane region 674 987 IPR036640 GO:0005524|GO:0016020
Eupl03g02224 1256 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 346 - -
Eupl03g02224 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1245 IPR003439 GO:0005524
Eupl03g02224 1256 PANTHER ABC TRANSPORTER B FAMILY 26 740 IPR039421 -
Eupl03g02224 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 338 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl03g02224 1256 MobiDBLite consensus disorder prediction 1 28 - -
Eupl03g02224 1256 SUPERFAMILY ABC transporter transmembrane region 37 346 IPR036640 GO:0005524|GO:0016020
Eupl03g02224 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1247 IPR027417 -
Eupl03g02224 1256 CDD ABC_MTABC3_MDL1_MDL2 373 611 - -
Eupl03g02224 1256 FunFam ABC transporter B family member 4 999 1253 - -
Eupl03g02224 1256 SMART AAA_5 1036 1228 IPR003593 GO:0016887
Eupl03g02224 1256 SMART AAA_5 399 585 IPR003593 GO:0016887
Eupl03g02224 1256 Pfam ABC transporter 392 539 IPR003439 GO:0005524
Eupl03g02224 1256 Gene3D - 1000 1254 IPR027417 -
Eupl03g02224 1256 Gene3D - 363 619 IPR027417 -
Eupl03g02224 1256 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524|GO:0016887
Eupl03g02224 1256 FunFam ABC transporter B family member 4 363 617 - -
Eupl03g02224 1256 CDD ABC_6TM_Pgp_ABCB1_D2_like 677 992 - -
Eupl03g02224 1256 Pfam ABC transporter transmembrane region 50 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl03g02224 1256 Pfam ABC transporter transmembrane region 691 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl03g02224 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 608 IPR003439 GO:0005524
Eupl03g02224 1256 CDD ABC_MTABC3_MDL1_MDL2 1009 1247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02224 Eupl-Chr3 52851486 52860800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02224 14 1255 Calmodulin-binding Proteins AT2G36910 49.097 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02224 K05658 - vvi:100259227 1877.83