Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02215 ATGGCGAAGAAGAGAAAGCCTGCTCCCGAAGAAGAACATACCTCCGAAGATGAAGAGCAACTGAGGGATCCAGAGACAGAGGAACCATCCGACGACGACAACGATGACGACGATGACGACGACGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGGTTCCAGACGAGAGACTGTACGGAAGCTCCTCGAACCCTTTGGGAAGGACCAGCTCATCGAGATTCTCAAGGAAGCAGCGCTTAAGGACCGTTCGATCATTGACCGGATCAGTCAGGGCACGGAATCAGACCCCGTCCACCGCAAGATCTTTGTCCACGGTCTCGGTTGGGACTCAACCACCGAAACCCTAATTTCGGTCTTCAAGCAGTACGGTCAGATCGAGGAATGCAACGTCGTCACAGACAAGCTCACTGGTAAATCCAAGGGCTATGGCTTCGTGCTCTTCAAGACTCGTGATGGAACCCGCAAGGCCCTGAAGCAGCCTCAGAAGAAGATAGGGAACCGGATGACCTCGTGCCAGCTGGCGGCTTTTGGGCCGGTCCCGAACCACCCAGTTCCCGACGCCACGCCACGGAAGATTTACGTCACCAACGTCCGTGCACATGTGCACCCAGAGAATCTCCGGGCGTTCTTAATCTTCGCCAAGTTTGGGGAGCTTGAGGAAGGACCGTTGGGGTATGATCGGATCACTGGTAAGCTTAGGGGTTTCGCTATATTTGTTTATAAGACGACGGAGGGATGTAAGAAGGCGTTGGAAGAGCCAATGAAGCTGTTCGAAGGGTGCAAATTGCAATGCCAGAGAGCAGTCGAAGAGCTCCGGGGATATAAAAATCAGATGGGGCAGCCTGTGGTGGGGTCAGCTGCATCTTCTGTTTTGCAGCCGAACGATCTTGCACTCACTTATGCAGTTGGTTTGAATCCAGGAATGGTTAGTCAGAATCTAAATCCGGCAGCCAGAGCAGTTCTTATGGGTCAGAGTCGGGGGATTGGGGTCTTAAACCCCGCTGCATTGGGCAGTTCCCTGAATCACACAGGGTTATCGCCCTCGATTGCTAGTGGGTTGTCGCCTTCGATGAATCGGAATGTGACAGCCCATCAATTGGGATTAAATGCGAACTTCGGTGGGCAACCGGGGATCAATAGCATAAGCCCGAGCATAATTGGTAGCTATGGTTCTCAGGCAGCTTACGGGTTGAGCGCATATTACAGCGCCCAACTGGGTCAATCTTCTGTGACAGCAGCAACAAGGTCTCAACCTGGTTCTGGATCTATAGGAACCATGCCATCTTACATCGGACTCTAG 1302 0.5246 MAKKRKPAPEEEHTSEDEEQLRDPETEEPSDDDNDDDDDDDDEEEEEEEEEEGSRRETVRKLLEPFGKDQLIEILKEAALKDRSIIDRISQGTESDPVHRKIFVHGLGWDSTTETLISVFKQYGQIEECNVVTDKLTGKSKGYGFVLFKTRDGTRKALKQPQKKIGNRMTSCQLAAFGPVPNHPVPDATPRKIYVTNVRAHVHPENLRAFLIFAKFGELEEGPLGYDRITGKLRGFAIFVYKTTEGCKKALEEPMKLFEGCKLQCQRAVEELRGYKNQMGQPVVGSAASSVLQPNDLALTYAVGLNPGMVSQNLNPAARAVLMGQSRGIGVLNPAALGSSLNHTGLSPSIASGLSPSMNRNVTAHQLGLNANFGGQPGINSISPSIIGSYGSQAAYGLSAYYSAQLGQSSVTAATRSQPGSGSIGTMPSYIGL* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02215 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723
Eupl03g02215 433 MobiDBLite consensus disorder prediction 1 15 - -
Eupl03g02215 433 MobiDBLite consensus disorder prediction 413 433 - -
Eupl03g02215 433 MobiDBLite consensus disorder prediction 1 61 - -
Eupl03g02215 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 200 IPR000504 GO:0003723
Eupl03g02215 433 Gene3D - 182 274 IPR012677 -
Eupl03g02215 433 Gene3D - 3 179 IPR012677 -
Eupl03g02215 433 PANTHER GEO13361P1-RELATED 91 311 - -
Eupl03g02215 433 MobiDBLite consensus disorder prediction 16 52 - -
Eupl03g02215 433 SUPERFAMILY RNA-binding domain, RBD 99 210 IPR035979 GO:0003676
Eupl03g02215 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 168 IPR000504 GO:0003723
Eupl03g02215 433 SMART rrm1_1 192 266 IPR000504 GO:0003723
Eupl03g02215 433 SMART rrm1_1 101 173 IPR000504 GO:0003723
Eupl03g02215 433 SUPERFAMILY RNA-binding domain, RBD 179 273 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02215 Eupl-Chr3 52729571 52731573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02215 187 283 C2H2 Transcription Factor Family AT2G19380 30.303 4.18e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02215 K12741 - nnu:104593496 532.332