Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02212 ATGGGTAGGTCTCCTTGTTGTGAGAAAGCTCACACTAACAAAGGAGCATGGACTAAAGAAGAAGACGATCGGCTTACCGCGCACATCCGAGCACATGGGGAAGGATGTTGGCGGTCCCTTCCGAAAGCCGCTGGCCTTCTAAGGTGTGGCAAGAGTTGTAGACTTCGTTGGATTAACTATTTACGCCCCGACCTTAAACGCGGCAATTTCACCGACGAAGAAGATGAATTAATCATCAAACTACATAGCCTACTTGGGAACAAGTGGTCGCTTATAGCGGGGAGACTACCAGGAAGAACAGATAACGAGATAAAGAATTACTGGAACACACACATAAGGAGGAAATTATTGAGCCGAGGAGTCGATCCAGTGACACACCGATCGATCAATGAGCCGGTATCGGACACAACAACGATCTCTTTCGCTGCTGTTGCTAAAGAAGAAGATAGAATTGTTGGTGGTTTTGAATGCAAAGAAGAGAAGAGTCGAAGCGAAGAACGGTGTCCAGACTTGAATCTTGAGCTTCGAATTAGCCCTCCTTATCAACACCCACCAGAGCCATTAACGAGTGGTGGAAGGAGAAGTCTTTGTTTCTCTTGCAGCTTGGGCTTGATGAATAGTAAGGAGTGCAGTTGTAGCAGCAGCAGCAGTAGTAGCAGCAGTGAATTCTTCGGCTTCAAGACTGGTGTCTTGGATTACAGAAGCTTGGATATGAAATATGATTGA 726 0.4628 MGRSPCCEKAHTNKGAWTKEEDDRLTAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGVDPVTHRSINEPVSDTTTISFAAVAKEEDRIVGGFECKEEKSRSEERCPDLNLELRISPPYQHPPEPLTSGGRRSLCFSCSLGLMNSKECSCSSSSSSSSSEFFGFKTGVLDYRSLDMKYD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02212 241 CDD SANT 69 112 IPR001005 -
Eupl03g02212 241 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl03g02212 241 FunFam Myb transcription factor 68 137 - -
Eupl03g02212 241 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Eupl03g02212 241 CDD SANT 16 61 IPR001005 -
Eupl03g02212 241 Gene3D - 14 66 - -
Eupl03g02212 241 FunFam MYB-related transcription factor 13 66 - -
Eupl03g02212 241 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Eupl03g02212 241 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl03g02212 241 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 205 - -
Eupl03g02212 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl03g02212 241 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl03g02212 241 Gene3D - 68 132 - -
Eupl03g02212 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl03g02212 241 SMART sant 66 114 IPR001005 -
Eupl03g02212 241 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02212 Eupl-Chr3 52692964 52694053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02212 1 239 MYB Transcription Factor Family AT2G16720 57.609 1.39e-104 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl03g02212 Myb_DNA-binding 9.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02212 K09422 - nnu:104604243 380.948