Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02198 ATGGATCAAAGTTTCGTATTCCAAGCCCCTAGCGATGAAGAACTCGAAAGCGACGAAGAAGAAGAGAACGAAGCTCAACAATCTCAATCTCCATGGGAGTTCGCCTCGTACTCCGAATCAGTCGCTGAAGAACACGCGCGAAGAAGCACAACCTCCATAGATTTTAAGATCTCGAAAGCTCTCGAAGAACGCTCGGTTCCAATCACAAATCACAGCGATGACGACGACGACAGTGATTCCGAACAAGACAAGCAAGAAAATTATAAACCAGAAGAAGGCGATGATGGAAATAATGCCGGAGAATCAAAGTCGTTCTTTGCATCCTCTGACGGAGCTTCATTTCATGCGAATTCGTTCATGGAGCTAAATCTTTCGCGTCCTTTGCTTCGATCCTGTGAGGCGTTGGGGTATCATAAGCCGACACCCATCCAGGCAGCGTGCATACCGCTAGCGTTAACTGGGCGTGATATTTGCGGGAGTGCCATTACTGGTTCTGGAAAGACTGCTGCATTCACTTTACCTGTGCTGGAGAGGTTATTATTTCGTCCGAAGCGCGTACATGCAATCAGGGTCCTAGTCCTCACTCCAACTAGGGAGTTGGCTGTACAGGTGCATAGTATGATAGAGAAACTTGCACAATTTACTGATATCAGATGTTGCTTGGTTGTTGGTGGACTTTCAACAAAGGTGCAAGAGGTAGCCCTAAGGTCAATGCCTGATATTGTTGTGGCCACTCCGGGGCGTATGATAGATCATTTACGCAATTCTCAGTCAGTGGGGTTGGAAGATCTTGCAGTTCTAATCCTTGACGAGGCAGATCGCCTTCTGGAACTTGGATTTAATGCTGAAATTCGTGAGCTGGTTCGCCTCTGTCCCAAACGGAGACAGACCATGCTATTTTCTGCTACGATGACTGAAGAAGTTGATGAGCTCATCAAACTTTCTCTAGCAAGACCCTTGCGCCTTTCGGCTGATCCATCGACAAAACGACCTGCAACACTGACTGAGGAGGTAGTTAGGATACGCCGTATGCGTGAAGTAAATCAGGAGGCAGTTCTTCTTGCATTGTGCTCTAAGACATTCACATCCAAAGTCATCATATTCAGTGGAACGAAACAGGCTGCACATAGGTTGAAAATATTATTTGGATTAGCTGGCTTTAAAGCAGCTGAGCTTCATGGCAATCTTACCCAAGTTCAGCGTCTCGACGCTTTGGAACTTTTCAGGAAGCAGCAAGTGGAATTTCTTATTGCAACCGATGTTGCTGCTCGTGGACTCGACATAATTGGTGTTCAAACAGTTATAAACTTTGCGTGCCCTCGTGACCTCACCAGCTATGTTCATCGAGTGGGTCGTACAGCAAGAGCTGGAAGAGAAGGATATGCTGTTACATTTGTCAGCGATAATGATCGGTCTGTCCTAAAATCCATTGCAAAAAGGGCTGGTTCAAAGCTGAGGAGTCGAATAGTTGCAGAGCAATCAATAGCTAAGTGGTGTCAGATAATTGAGGAAATGGAAGATCAAGTTGCTGCTCTTCTTCAGGAAGAGAGGGAAGAGAGAGCTCTGAGAAAAGCTGAAATGGAAGCGACAAAGGCAGAAAATATGATTGCACACAAGGATGAAATTTATTCACGCCCTAAACGAACCTGGTTTGCAACAGAAAGGGAGAAAAAACTTATAGCTAAGGAAACAAAGGCTTCTATGGAGAAAGATAAAAGTTCGTCAAAGGAGGTAATTAGTGCCCAGCAAGCCGAAGATCTCAAAATGAAGGAAAAGAGAAAACGGGAGCGTGAGAAAAATTTGCCACGGAAGAAACGTAGAAGACTTGAAGCAGCTCGAGAGATGTTGGAGGATGATGGTCAAACAGACGAGTTAGAACAGGGAGGAGGAAATGGTAAGAAAGACAAAGCGGGAAAATTACTTGTTGATGTGGCTTATCGTCAGGCAAAATCAGTGAAGGCCATGATGAAGGCACAAGCTGCTGGCAAGATAATGAAGAACTCAGGCAAGACATTGAAACGCCCTTCCCAGAGAACGCAATCAAGGCCAGAAGAGATGCGGGAACTATTCCAGAGTGATATGGATGAAAGGAAACAGAAAAAAAGCATTCATGGAGCAGGAAAGAAAAAGTCTAAACATTCTTTCAAGAGCAAATCACGGTATAAACGCAGATAG 2175 0.4506 MDQSFVFQAPSDEELESDEEEENEAQQSQSPWEFASYSESVAEEHARRSTTSIDFKISKALEERSVPITNHSDDDDDSDSEQDKQENYKPEEGDDGNNAGESKSFFASSDGASFHANSFMELNLSRPLLRSCEALGYHKPTPIQAACIPLALTGRDICGSAITGSGKTAAFTLPVLERLLFRPKRVHAIRVLVLTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNSQSVGLEDLAVLILDEADRLLELGFNAEIRELVRLCPKRRQTMLFSATMTEEVDELIKLSLARPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVEFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVSDNDRSVLKSIAKRAGSKLRSRIVAEQSIAKWCQIIEEMEDQVAALLQEEREERALRKAEMEATKAENMIAHKDEIYSRPKRTWFATEREKKLIAKETKASMEKDKSSSKEVISAQQAEDLKMKEKRKREREKNLPRKKRRRLEAAREMLEDDGQTDELEQGGGNGKKDKAGKLLVDVAYRQAKSVKAMMKAQAAGKIMKNSGKTLKRPSQRTQSRPEEMRELFQSDMDERKQKKSIHGAGKKKSKHSFKSKSRYKRR* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02198 724 SMART ultradead3 136 337 IPR014001 -
Eupl03g02198 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 496 IPR001650 -
Eupl03g02198 724 Coils Coil 495 535 - -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 82 98 - -
Eupl03g02198 724 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 76 680 - -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 657 724 - -
Eupl03g02198 724 Gene3D - 324 496 IPR027417 -
Eupl03g02198 724 CDD SF2_C_DEAD 334 466 - -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 603 618 - -
Eupl03g02198 724 Pfam Helicase conserved C-terminal domain 353 457 IPR001650 -
Eupl03g02198 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 322 IPR027417 -
Eupl03g02198 724 SMART helicmild6 372 457 IPR001650 -
Eupl03g02198 724 Pfam DEAD/DEAH box helicase 141 311 IPR011545 GO:0003676|GO:0005524
Eupl03g02198 724 CDD DEADc_DDX27 128 323 - -
Eupl03g02198 724 Gene3D - 78 323 IPR027417 -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 40 73 - -
Eupl03g02198 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 480 IPR027417 -
Eupl03g02198 724 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 117 145 IPR014014 GO:0003724
Eupl03g02198 724 Coils Coil 581 601 - -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 677 702 - -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 562 576 - -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 562 640 - -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 703 724 - -
Eupl03g02198 724 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 268 276 IPR000629 -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 12 26 - -
Eupl03g02198 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 322 IPR014001 -
Eupl03g02198 724 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02198 Eupl-Chr3 52319620 52344205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02198 105 474 Eukaryotic Initiation Factors Gene Family AT3G13920 33.780 4.76e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02198 K13181 - nnu:104590024 1111.67