Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02196 ATGGCCGAAACCCCACCTCAGCCACCAATATCGGATCCCGAACCGCTACAATACTGGTGCTACCACTGCGACAAGCAAGTCTCCATCGAAACGCTAACCGATCTCCCCGACATCATCTGTCAAGAATGCAAGAACGGCTTCGTCGAATCGATCTCCGCTGCACTACCACCGCCTCCGGCAGCTCATCGCAGCCAAGAACCCTCTTTCAGTCATCAATTTCTTCAAGTCCTCCGATTAATCGCTCAAGCGGCCCGCGACGACGACGCTCCCCCTCCACCGCCTCCGGATCCAGTCTCCGATCCCTCCGAAGCCGACGATTTCCTCCGTATCGAACTAGATGGATGGGACAACGACGAAGAAGATGACGATGAAGACGACATCGTATTTGGAAACAGCGAGGGTGATCGATCTGATAATGAGATCGGAGACGAAGAGGAAGATCAAGATGAAGACGAAGGAGATCGCCGTCGGAGACGGCGTGACATACTCCGACTCCGTATCAGGGACTTCGCCTCTCGCGCGGCGACAGGACGGAACCGGATCCTCGATTGGTCGGAGATCTTGATGGGATTAGAAGACAATACGATCGAATTGCGCGTCGAGATGCCGGAATCGGATGGATACATGGGGAATCCTGAGGATTATGTTGATGCGGCGGGGTACGAGGTGTTGTTGCAGAATTTGGCGGAGAGCGACGGGGGAGCAAGGAGAGGGGCTCCACCTGCTGCAAGATCTGCCGTTTCGGCGTTACAGACGGTAGAGATCACACCGGAGGAGGAGGGTTTGATATGCGCTATATGTAAGGAATCGGTGCCGGTAGGGGAGAAAGCGAGGAAGTTGCCGTGTGGGCATGGCTACCATGGGGACTGCATAGTGCCATGGTTGGGGTCGAGGAATTCTTGCCCAGTTTGTAGGTTTGAGTTGCCAACGGACGATCCGGAGTATGAAGAGGAGAGGAAGAAGAGATCGACGGCGTCCACCGCTGGTGGGCCGTCTGATTCTGGAGGGAATAATACCGTCTCCAGTTAA 1029 0.551 MAETPPQPPISDPEPLQYWCYHCDKQVSIETLTDLPDIICQECKNGFVESISAALPPPPAAHRSQEPSFSHQFLQVLRLIAQAARDDDAPPPPPPDPVSDPSEADDFLRIELDGWDNDEEDDDEDDIVFGNSEGDRSDNEIGDEEEDQDEDEGDRRRRRRDILRLRIRDFASRAATGRNRILDWSEILMGLEDNTIELRVEMPESDGYMGNPEDYVDAAGYEVLLQNLAESDGGARRGAPPAARSAVSALQTVEITPEEEGLICAICKESVPVGEKARKLPCGHGYHGDCIVPWLGSRNSCPVCRFELPTDDPEYEEERKKRSTASTAGGPSDSGGNNTVSS* 343
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02196 342 SUPERFAMILY RING/U-box 258 311 - -
Eupl03g02196 342 MobiDBLite consensus disorder prediction 114 155 - -
Eupl03g02196 342 FunFam E3 ubiquitin-protein ligase RING1-like 227 311 - -
Eupl03g02196 342 MobiDBLite consensus disorder prediction 309 324 - -
Eupl03g02196 342 MobiDBLite consensus disorder prediction 308 342 - -
Eupl03g02196 342 MobiDBLite consensus disorder prediction 85 104 - -
Eupl03g02196 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 311 IPR013083 -
Eupl03g02196 342 MobiDBLite consensus disorder prediction 325 342 - -
Eupl03g02196 342 SMART ring_2 264 304 IPR001841 -
Eupl03g02196 342 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Eupl03g02196 342 MobiDBLite consensus disorder prediction 114 129 - -
Eupl03g02196 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 135 309 - -
Eupl03g02196 342 Pfam Ring finger domain 264 305 IPR001841 -
Eupl03g02196 342 Pfam zinc-ribbon 17 51 IPR039525 GO:0061630
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl03g02196 Eupl-Chr3 52297928 52299587 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02196 108 321 C3H Transcription Factor Family AT5G01980 39.910 1.12e-35 133
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02196 - - ming:122072762 414.075