Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02188 ATGAAGCGTTCCTTTCCCCTCAACGTCGCCACCAAACCGTACAAAACCATTTGTGGAATTTTGATATTTATCTCTTGTGTCCGATTCTCTTCTGCTCTTGTTCATCTCAGAGGAAAATCCTTCTCCATTTCCTTCATCGACGCTCCCGCCAGATTCGCTGTTCGCGTCAATAGCTCTGGTATCTGTGGCGCTCTGTATTTGGCGGATCCTCTCGACGCCTGTTCTTCGCTTCGGAACAGTCTGAAATCGGAAGAAGCCGAGTCAGTGAGATTTGCTTTGATTGAGAGGGGTAGATGCGCTTTCGAAGACAAGGTCCGGAATGCTCAAGAGGGTGGATTTCATGCGGCAATCGTGTATGACGATGGCGACAAGAGGAATTTAGTTTCTATGATTGGAAATTCTGAAGGCATATGGGTGCATGCAGTCTTTGTTTCGAAGGCAGCAGGTGAAACCTTAAAGAATTTTGCTCGAGGTGAAGAAGGCGAATGCTGCATCACCCCCTCATTAGAGGAAACAGCTTGGACCGTATTGGTAATTTCGTTCATTTCTCTTCTCGTCATAGTATCCGTCCTGGCAACATTCTTCTTTACACGGAACCGTCGGGTTCACCGACAAGGAACACATCACCATCCTCCAAGCATAGACAGACAGATAGTGGAAGTCCTTCCCTGCTTCACATATAACACCACTTGCCCAAGTGGTCATCTCATAGGAGAGACGTGTGCTATTTGTCTTGAAGATTATAGAGATGGAGAAACTCTCAGAGTTCTCCCCTGCCGACATGAATTTCACGCAAGCTGTGTCGACTCATGGCTGACTAAGTGGGGAACTTTCTGCCCGGTGTGCAAGCATGACATGAGCAAGGACACAGCAGGTCATCTGGTGAGTGAGCAAGTGCCATTGTTGTCTTTGTTGACTGCTGGGTAA 927 0.4757 MKRSFPLNVATKPYKTICGILIFISCVRFSSALVHLRGKSFSISFIDAPARFAVRVNSSGICGALYLADPLDACSSLRNSLKSEEAESVRFALIERGRCAFEDKVRNAQEGGFHAAIVYDDGDKRNLVSMIGNSEGIWVHAVFVSKAAGETLKNFARGEEGECCITPSLEETAWTVLVISFISLLVIVSVLATFFFTRNRRVHRQGTHHHPPSIDRQIVEVLPCFTYNTTCPSGHLIGETCAICLEDYRDGETLRVLPCRHEFHASCVDSWLTKWGTFCPVCKHDMSKDTAGHLVSEQVPLLSLLTAG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02188 308 SUPERFAMILY PA domain 91 153 IPR046450 -
Eupl03g02188 308 CDD PA_C_RZF_like 22 170 IPR044744 -
Eupl03g02188 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 292 IPR013083 -
Eupl03g02188 308 Gene3D - 33 166 - -
Eupl03g02188 308 FunFam Putative RING zinc finger domain superfamily protein 209 288 - -
Eupl03g02188 308 SMART ring_2 241 282 IPR001841 -
Eupl03g02188 308 Pfam PA domain 87 152 IPR003137 -
Eupl03g02188 308 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Eupl03g02188 308 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 32 166 - -
Eupl03g02188 308 Pfam Ring finger domain 240 283 IPR001841 -
Eupl03g02188 308 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 160 297 - -
Eupl03g02188 308 ProSiteProfiles Zinc finger RING-type profile. 241 283 IPR001841 -
Eupl03g02188 308 SUPERFAMILY RING/U-box 235 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02188 Eupl-Chr3 52200010 52208496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02188 44 303 C3H Transcription Factor Family AT1G22670 44.318 1.05e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02188 K15692 - nnu:104590046 419.468