Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02178 ATGGCGCAGGGAAGCAGATCGACTGGTGTTGTGAAGTGGTTCAACGGCCAGAAGGGTTTCGGGTTCATCACTCCGGATGATGGAGGTGAAGATCTCTTCGTCCATCAGTCCTCGATTAAATCAGAGGGCTACCGAAGCCTCGCTGAAGGAGAAAACGTGGAGTTTCAGATCGAGCAAGGAGAAGACGGGAGGACGAAAGCCGTCGATGTAAGTGGCCCGGACGGGTCGTTCGTTCAGGGAGGCAAAAGAGACAGCTACGGTAGTGGCGGCGGCGGTGGCGGGAGAGGTGGCCGTGGTGGTGGATACGGTAGTTACGGTGGTGGAGGTGGAAGTTACGGTGGTGGAGGTGGAAGTGGAAGCTACGGTGGTGGAGGTGGCGCTTACGGTGGTGGATACGGTTTTAACGGCGGAGGGAGAGGTGGTGGTGGTAGGGGTGGAAGAGGTGGTGGAGGGAGAAACGGTGGTGGTGGTGGGTATGGCGGCGGAGGTGGTGGTGGGTACGGTGGTGGTGGTGGTGGCGGCGGGTCTTGTTACAACTGTGGCGAGACTGGGCATTTTGCGAGGGACTGTTATCAGGGAAGCAGCGGCGGTGGAGGTGGTGGAAGATTCGGTGGCGGTGGCGGTGGCGGTGGTGCAGGCGGCGGTGGAGGCTGCTACAATTGTGGGGAGCAAGGGCATTACGCCAGAGAATGTCCTAACCCCAATGCCATGAATTGA 717 0.5941 MAQGSRSTGVVKWFNGQKGFGFITPDDGGEDLFVHQSSIKSEGYRSLAEGENVEFQIEQGEDGRTKAVDVSGPDGSFVQGGKRDSYGSGGGGGGRGGRGGGYGSYGGGGGSYGGGGGSGSYGGGGGAYGGGYGFNGGGRGGGGRGGRGGGGRNGGGGGYGGGGGGGYGGGGGGGGSCYNCGETGHFARDCYQGSSGGGGGGRFGGGGGGGGAGGGGGCYNCGEQGHYARECPNPNAMN* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02178 238 SMART csp_8 8 73 IPR011129 GO:0003676
Eupl03g02178 238 MobiDBLite consensus disorder prediction 59 96 - -
Eupl03g02178 238 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Eupl03g02178 238 ProSiteProfiles Zinc finger CCHC-type profile. 218 233 IPR001878 GO:0003676|GO:0008270
Eupl03g02178 238 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Eupl03g02178 238 FunFam Cold shock protein 1 1 71 - -
Eupl03g02178 238 Gene3D - 2 85 IPR012340 -
Eupl03g02178 238 ProSiteProfiles Zinc finger CCHC-type profile. 177 190 IPR001878 GO:0003676|GO:0008270
Eupl03g02178 238 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 234 - -
Eupl03g02178 238 Gene3D - 213 237 - -
Eupl03g02178 238 Gene3D - 172 199 - -
Eupl03g02178 238 Pfam Zinc knuckle 217 233 IPR001878 GO:0003676|GO:0008270
Eupl03g02178 238 Pfam Zinc knuckle 176 190 IPR001878 GO:0003676|GO:0008270
Eupl03g02178 238 CDD CSP_CDS 8 72 IPR002059 GO:0003676
Eupl03g02178 238 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Eupl03g02178 238 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Eupl03g02178 238 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Eupl03g02178 238 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Eupl03g02178 238 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Eupl03g02178 238 SMART c2hcfinal6 217 233 IPR001878 GO:0003676|GO:0008270
Eupl03g02178 238 SMART c2hcfinal6 176 192 IPR001878 GO:0003676|GO:0008270
Eupl03g02178 238 SUPERFAMILY Retrovirus zinc finger-like domains 169 235 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02178 Eupl-Chr3 52047110 52050659 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Eupl03g02178 CSD 8.1e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02178 - K09250 msin:131243512 155.606