Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02159 ATGGCCGGAAACTACAAGTTTTGGATGGACCAAAAGGACATCGTTAGATTCCTGATGGCATCCGTTGGAAGCTTCATCCAAGACCGGTTGATCAACAAAGAACAGAGGATCCTACATAAAGAACAATGCGCAGAGAGATTAGCAGCCGAAGATGAGAGCTGTGACAAAGACGGGGAAGTCAGATACTCCGACCAGGCTGTATTGGCAAATTTGGATTGGGGCATCGATGCCCTAGAAGAAGCAATCAACACCTCTAACGTGGAAACCAAACTTGCTCGGTTAGATTATGCAGAGAAAATGTTGCAGGTCTGTGCAATGTTGAATTCCAGGCAGAAAACCGCTGGAGTCCCCAATTTCTACCTCGCTGCTTGGGCCCACCTCAACCTCGCCTTCCTATGGAAACTGCGGAACAATGTCCACAATTCGGTTCTTCACATTCTTGAGATGTTTATCATTGACCCCTTCTTCTCGCGGATTGATTTTGCTCCGGAGATATGGAAAGCTCTATTTCTTCCACACATGAGCTCTATTGTCGGGTGGTACTCGGAGGCAAGACACAGGCTTGTGATGGAAGTGATTCCTGACTCCACTGATTTGTCCTTTACAGCTGATTTCGATCAGTTCTTCAACGAGTCCTTGGTCTTCTCCATGAGGCCTGATCAAGCAGAGAAGTTGCAAAAATTGGAGCAGCTGTACGGGGAATCGTTGGATGAGAACACACGGCTTTATGCAAAGTACTATAAGGATTGCATGAACTTTGATTCAATGACAAGCAAGAAGGCGATTCCAATGCCTCCCATTGCAGAGCCGCCAATGACACCTTTGCATGAGGTGAGCAGGTCAATTCCAGATTATGTGAAATTCGGTCCTATCTTGCCTAAGAGTGCTGGATTTTCTCAATTTCTGAAAGATAAAGATGATGGAAGAGAGAGTTGCAGATATGTAACTTCACACTCTACACTGAAACGGGAGGAATCTGCTAAATGGGGTCCTAAAGAGGGCTTGCTTGAGGAGAATGAAGATGATTTTGACTCCGACTATGGCGATGGTGATATAGATTCTGAAGTTAAAACACACACACTAGTAGCTCTGAATAGCATGAGAATGAATGAGGATGCAGGAAGTGGGTCAAAAGTACAACCACTGAGAAAGAAGGATCGAACACATTCTCCCACAGTTTACTCTCCTATGGTTTCCCCTAAAACTCCTCCTAAGGTTTCATCTCCAAAGCCAGATGTACGATGTAAAAAAGATCCCGAGCCCATCTTGCGCCTTTTGTCTGGTCGTCTCATGGATCCTACCATTTCTATCTCTTTGCCTGGAACTCCACGTTTGTGTAATGACTCCAGCATCAGTTCAGCAGACTCTGATGTTGAAGTGATGGGAGTGCAGAAATGTTGCAGGAAGAACTTAAGTTTTGGACGGAGTATGAGTTTTGGAGATATAAATACCCAAGTATTAGAGAATAGCTTGCTTAATGAAAGCGAAGAAGAAGGAAGCCAAGGCAGCATTTCTATCCCATCATCAGGGAAGTTGACTCCTCGAACGAGACCACCAAAGGATTTTGTCTGTCCCATCACAGGCCAGATTTTCTGTGATCCAGTTACTCTTGAAACCGGCCAAACATATGAAAGAAGAGCAATTCAAGAATGGCTGAAAAGAGGAAATACAACATGCCCCATTACCCGCCAGCCCCTCTCTGCAACTCTACTGCCCAAAACGAATTATGTTTTGAAGAGACTAATCACCTCTTGGAAAGAACAGTATCCCGATGTTGCCCAAGAATTTTCATGCTCCGAAACACCAAGAACTTCCATCAGCACTACCTCTGCAAGAGAACTTCCATTGGAGTCAACGGCATTTAGTAATCCCATCAAAGACCATTACATTAGCAAAAAGAGCAACAGATTTATGCGGGCAGCAGTCTCTACATCTCCAACCAGTGTGATATCTCAAGCTGCTGTTGAGACAGTAATAAATGGGTTAAAGCCTTACACTTCATGTCTCTGCACTTCAGAGGACTTACAAGAATGTGAAGCTGCTGTGTTGACAGTAGCAAGGATATGGAAGGACTCAAAGGCTGATCCAGGGGTTCAATCGTATCTGTCCAAACCAACAATAGTAAACGGGTTTGTCGAAATACTGTTGGCTTCTGTCAACAGAGAGGTTCTCAGAACATCAATATATGTTCTATCCGAGCTCATATTTGCAGATGAAAGTGTGGGTGAAACTCTCACTAGTGTAGATTCTGATTTTGATTGCCTGGCTGCTCTGCTTAAAAATGGTCTAGCTGAGGCTGCTGTTCTTATCTACCAGTTAAGACCAGCATATGCTCAGCTTTCTGTCCATGACCTTATACCCTCCCTTGTCCAAGTAATCTTAAACAGAGATGAAGAGTTGGATGATTTTCAGTTGGTAATGGATCCCAAGGATGCTGCAATAGCAATGCTTGAGCAGATTCTGCTAGGAGGGGATGAAAACAGCAGGTCACTCAATGCATCAAATCTTATTTCTGCAAATGGACTTCCTCCTTTAATCAAGTGTCTGGACCGGGTTGAGGGAAGGCAATCTGTTGTGTCCATACTCTTCAGTTGTATGCATGCAGATAGAAGTTGCAGGAATTTGATAGCAAACAGAGCTGAGCTCGCTCCTGTTCTTGAATTGTTTCATGCTGGAAATGACAGTGTGAGGGGTATATGCATTGGTTTTCTCTCTGAGCTGGTTTGCTTAAACAGGAGGACATTCTGCAACCAGATTTTGCAGATAATTAAAGATGAAGGAGCATTTAGTACAATGCACACCTTTCTTGTGTACCTTCAGATGGCTCCCATGGAGCAACAACCTGCCATTGCCAGTCTTCTTCTTCAGCTTGATCTCCTGGTTGAACCTCGGAAGATGAGTATTTACAGGGAGGAAGCTATAGAGGCACTAATTGAAGCACTTCGTAGAAAGGACTTCCCCATTTCTCAAATCATGGCTCTAGATGCATTTGCATCTCTTTCTGGGCGCTTGACTGCCTCCGGAAAGTCCCTTACTGAAGCCTGGTTACTCAAAACTGCAGGGCTTGATCAGCCTTACAATGCCTTAATGAAGGCAGAGATGCTGAAAGTACAGGAGGATGAATCAATGGAAACAATGGAAGAGGAAGAGAAAGCTGCAAGTTCTTGGGAGAAAAGGGTAGCTTTTGTGCTTAGCAACCATGAAAATGGATCTATTTTTAAAGCTTTAGAAGAATGCCTTAAGAGCAACTCTTTGGAGATGGCGAAGTCATGCCTTGTCATTGCTACATGGCTCACCCACATGCTTACTAGTCTTCCCGATACTGGTGTAAGAGATACTGCACGCCACTGCTTGCTTGATCAATTTATAAATGTCCTCCAATCATCCAGAAACCTTGAGGAGAAGGTTCTTGCCACCCTTGCTTTAAAAAGCTTCATTAACGATCACGATGCACTTAACGAACTCGGAATGTATGCAAAAGGCATTTGCAAATCCTTGAGGAAGCTTAAAAGGAGTTCAGTTGTGGTCACAGATATATTGAAAGCACTGATGAACTTGTCGTCCATTAACGCAACAGAGCTGTGGTCCTGTCCTGAAGGAACTGAGATAGATTCGGGTACCAACGGGGAAGTTTTGTCCTTGGTTCATCTAAAAGGTCGGCTTTTTAGCAGCCATTCTGATGGAACTATAAAGGTGTGGGATGCTGGCAAGAGGGTGTTAAGGTTGATTCAAGAAGTTCGTGAGCATACAAAGGCAGTCACATGCCTATTCATTCCATCTTCAGGTGACAAGCTATACAGTGGTTCACTAGACAAAACAATTCGAGTTTGGGCAATCAAACAAGAAGAAATTCATTGCGTCCAAGTTCATGACGTGAAAGAGGCTGTACATGAGTTGGTAGCTAACACCAGATTTGCGTGCTTTGCTTCTCAAGGAACCGGAGTTAAGGTCTATAACTGGAGTGGAGTTCCAAAGCATATAAACTTCAACAAATATGTCAAGTGCCTAGCCATGACCGATGAAAAACTATATTGTGGATGCACTGGTTACAGCATTCAGGAGGTGGATTTATGCAAATGCATACCAAGTACATTCTTCTCTGGGACGAGAAAACTGCTGGGGAAACAGACCATGCACGCACTCTACATTCATGATGGATTTCTCTTTGCTGGTGGTTCTTCAGTTGATGGGATAGCAGGAAAGGCATTCTCGCTCTCAACTAAGGCGGTAACTGGGCAGTTGCCAACGGGATTCGACATCCACAGCATAGCCGTCAACAACGATTTTGTATTTACAGGAACCAAATGTGGGAACATTGAGGTCTGGTTAAGAGAACGGCTGGTAAGGGTTGCCAACATCAAAATGGGTGGTGGGGGGAACACAAAACTCACATCCTTGACATTAGATTCAGATGGAGAGATGCTTTTCGCCAGTTCTTCTGATGGCAAGATCCAGGCCTGGGCTCTGGACTGA 4473 0.4427 MAGNYKFWMDQKDIVRFLMASVGSFIQDRLINKEQRILHKEQCAERLAAEDESCDKDGEVRYSDQAVLANLDWGIDALEEAINTSNVETKLARLDYAEKMLQVCAMLNSRQKTAGVPNFYLAAWAHLNLAFLWKLRNNVHNSVLHILEMFIIDPFFSRIDFAPEIWKALFLPHMSSIVGWYSEARHRLVMEVIPDSTDLSFTADFDQFFNESLVFSMRPDQAEKLQKLEQLYGESLDENTRLYAKYYKDCMNFDSMTSKKAIPMPPIAEPPMTPLHEVSRSIPDYVKFGPILPKSAGFSQFLKDKDDGRESCRYVTSHSTLKREESAKWGPKEGLLEENEDDFDSDYGDGDIDSEVKTHTLVALNSMRMNEDAGSGSKVQPLRKKDRTHSPTVYSPMVSPKTPPKVSSPKPDVRCKKDPEPILRLLSGRLMDPTISISLPGTPRLCNDSSISSADSDVEVMGVQKCCRKNLSFGRSMSFGDINTQVLENSLLNESEEEGSQGSISIPSSGKLTPRTRPPKDFVCPITGQIFCDPVTLETGQTYERRAIQEWLKRGNTTCPITRQPLSATLLPKTNYVLKRLITSWKEQYPDVAQEFSCSETPRTSISTTSARELPLESTAFSNPIKDHYISKKSNRFMRAAVSTSPTSVISQAAVETVINGLKPYTSCLCTSEDLQECEAAVLTVARIWKDSKADPGVQSYLSKPTIVNGFVEILLASVNREVLRTSIYVLSELIFADESVGETLTSVDSDFDCLAALLKNGLAEAAVLIYQLRPAYAQLSVHDLIPSLVQVILNRDEELDDFQLVMDPKDAAIAMLEQILLGGDENSRSLNASNLISANGLPPLIKCLDRVEGRQSVVSILFSCMHADRSCRNLIANRAELAPVLELFHAGNDSVRGICIGFLSELVCLNRRTFCNQILQIIKDEGAFSTMHTFLVYLQMAPMEQQPAIASLLLQLDLLVEPRKMSIYREEAIEALIEALRRKDFPISQIMALDAFASLSGRLTASGKSLTEAWLLKTAGLDQPYNALMKAEMLKVQEDESMETMEEEEKAASSWEKRVAFVLSNHENGSIFKALEECLKSNSLEMAKSCLVIATWLTHMLTSLPDTGVRDTARHCLLDQFINVLQSSRNLEEKVLATLALKSFINDHDALNELGMYAKGICKSLRKLKRSSVVVTDILKALMNLSSINATELWSCPEGTEIDSGTNGEVLSLVHLKGRLFSSHSDGTIKVWDAGKRVLRLIQEVREHTKAVTCLFIPSSGDKLYSGSLDKTIRVWAIKQEEIHCVQVHDVKEAVHELVANTRFACFASQGTGVKVYNWSGVPKHINFNKYVKCLAMTDEKLYCGCTGYSIQEVDLCKCIPSTFFSGTRKLLGKQTMHALYIHDGFLFAGGSSVDGIAGKAFSLSTKAVTGQLPTGFDIHSIAVNNDFVFTGTKCGNIEVWLRERLVRVANIKMGGGGNTKLTSLTLDSDGEMLFASSSDGKIQAWALD* 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02159 1490 SMART Ubox_2 521 585 IPR003613 GO:0004842|GO:0016567
Eupl03g02159 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1489 - -
Eupl03g02159 1490 Gene3D - 639 1040 IPR011989 -
Eupl03g02159 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1246 1280 - -
Eupl03g02159 1490 ProSiteProfiles U-box domain profile. 517 592 IPR003613 GO:0004842|GO:0016567
Eupl03g02159 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 597 IPR013083 -
Eupl03g02159 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1246 1280 IPR001680 GO:0005515
Eupl03g02159 1490 SUPERFAMILY RING/U-box 516 590 - -
Eupl03g02159 1490 SUPERFAMILY WD40 repeat-like 1219 1489 IPR036322 GO:0005515
Eupl03g02159 1490 Gene3D - 1202 1490 IPR015943 GO:0005515
Eupl03g02159 1490 SMART WD40_4 1407 1443 IPR001680 GO:0005515
Eupl03g02159 1490 SMART WD40_4 1196 1234 IPR001680 GO:0005515
Eupl03g02159 1490 SMART WD40_4 1239 1278 IPR001680 GO:0005515
Eupl03g02159 1490 SMART WD40_4 1446 1488 IPR001680 GO:0005515
Eupl03g02159 1490 MobiDBLite consensus disorder prediction 370 417 - -
Eupl03g02159 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1456 1490 IPR001680 GO:0005515
Eupl03g02159 1490 SUPERFAMILY ARM repeat 654 1165 IPR016024 -
Eupl03g02159 1490 MobiDBLite consensus disorder prediction 493 516 - -
Eupl03g02159 1490 CDD RING-Ubox_PUB 519 571 IPR045210 -
Eupl03g02159 1490 MobiDBLite consensus disorder prediction 493 512 - -
Eupl03g02159 1490 Pfam U-box domain 519 588 IPR003613 GO:0004842|GO:0016567
Eupl03g02159 1490 Coils Coil 1029 1049 - -
Eupl03g02159 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1456 1490 - -
Eupl03g02159 1490 Pfam WD domain, G-beta repeat 1242 1277 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02159 Eupl-Chr3 51771125 51779849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02159 519 907 U-box Gene Family AT1G23030 26.131 2.10e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02159 - - msin:131226400 2225.67