Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02154 ATGGAGAACTCCAAGGAAGATTGCGGAGGCGCAAAAACGAACAACGAAAACCCTAATTCTGCGACGGAAACCGATGCCGGATCGAATTTGGCTCCGTCTCGGCAGTCTTCAAGAACGCCGTTCACGAACCTTAGTCAGGTTGATGCGGACCTTGCTCTTGCCCGGACTTTACAGGAACAGGAAAGGGCATATATGATGCTCAGAATGAATGGTGAAGGGAGTGATTATGGAAGTTCGGAGACAGGAAGTTATGTGTATGAAGATGATGCTGATGATCCAAACGACGATGAAAATGTTGGGCATGATGCTGATGAAGATGCATTTGACGTGCATGAGCGTGCTGCTGCAGCTGATAATAGCCAGGGTGTTGAACTTGATCCCTCGGCATTCAATAGTGACGAGGCCTATGCAAGAGCTCTCCAGGATGCTGAAGAGAGAGAAATGGCTGTGCATTTGATGGCCCTTGCTGGGATAAACGAATGGGAACCAGAGGATACAGAGGACCATGGCAGTAACTCTCAGGACACGTGGGAGGACGTCGATCCAGATGAACTGTCATACGAGGAATTGATTGCACTGGGTGAAATAGTTGGAACTGAGAGCAGAGGGCTTTCTGCAGATACAATCGCCTCTTTGCCTTCAGTAAATTACAAAGCGCAAGGCAATCAAGATGGAAGCGCTGATCCATGTGTCATTTGCCGGTTGGACTATGAGGATGGTGACACCCTGACCGTGCTTTCATGCAAGCATTCATACCACTCTGAGTGCATAAACAATTGGCTTCAAATAAACAAGGTCTGTCCTGTTTGCAGTGCCGAGGTTTCCACTTCTGAAAACAGGTAG 843 0.4816 MENSKEDCGGAKTNNENPNSATETDAGSNLAPSRQSSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNGEGSDYGSSETGSYVYEDDADDPNDDENVGHDADEDAFDVHERAAAADNSQGVELDPSAFNSDEAYARALQDAEEREMAVHLMALAGINEWEPEDTEDHGSNSQDTWEDVDPDELSYEELIALGEIVGTESRGLSADTIASLPSVNYKAQGNQDGSADPCVICRLDYEDGDTLTVLSCKHSYHSECINNWLQINKVCPVCSAEVSTSENR* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02154 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 277 IPR013083 -
Eupl03g02154 280 MobiDBLite consensus disorder prediction 85 101 - -
Eupl03g02154 280 FunFam E3 ubiquitin ligase BIG BROTHER-related 196 277 - -
Eupl03g02154 280 SMART ring_2 230 270 IPR001841 -
Eupl03g02154 280 MobiDBLite consensus disorder prediction 71 101 - -
Eupl03g02154 280 MobiDBLite consensus disorder prediction 1 45 - -
Eupl03g02154 280 Pfam Ring finger domain 230 270 IPR001841 -
Eupl03g02154 280 SUPERFAMILY RING/U-box 229 277 - -
Eupl03g02154 280 MobiDBLite consensus disorder prediction 10 45 - -
Eupl03g02154 280 ProSiteProfiles Zinc finger RING-type profile. 230 271 IPR001841 -
Eupl03g02154 280 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 13 279 IPR043312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02154 Eupl-Chr3 51623006 51631043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02154 31 174 C3H Transcription Factor Family AT3G19910 52.903 1.03e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02154 K19045 - nnu:104600135 461.07