Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02123 ATGTCGGTCTCTGGCGAAGGTTCGAATCCCTCCAATCCCCAATTTCAATTGCAGTCTCAGTCGCCTTCGCCTCAAATTCTTGGCCCTCTGAAACGCCACTTCCCCTTCTCTTCTCCAAAACCACCCTCTTTCTCCTTCTCCTCTTCTTCTCCATCTTTCGACTCCCAGCGCTTTCTCCGAACCGGTGGCGGCGGCAGCAGAAAAGAAGAAAAGATCTTTGCTAGGATTCCTTTAAAGCAAACAAATGAAACAGACGACCATGAAGCTCAGATTGGTGAATGGGTAACTAGCCAAGGACAAATGGAAACAGTTAACAATCCACTTTCATCTGTGTCAGGCACAGGTGGTAAGCGTAATCGGACCGGTGATTACGGTCCACTTACGCCTATATCAGGCTCAGGTGGTAAGCGTTACGGTAGATCAAAGGTATCAAAACATACAATATCTGGGCCTCCAACTCCTGAATCAAATGCTGGCTCACCTTCTAATATTTTGAATCCAGCTAGTAGCTGTCGTTATGATAGTTCTCTAGGCTTGTTGACAAAGAAATTCATTAGTTTGATCGTGGAGGCTAAGGATGGTATTCTTGATCTGAACAAGACCGCAGATATCTTGGAGGTCCAGAAGAGGAGAATATACGATATTACAAATGTTCTTGAAGGAATAGGATTATTAGAGAAAATGTCAAAGAACAATATACGCTGGAAGGGACTTGATATGTCAAGGCCAAGGGAGCTGGATGATCAGGTTACTAGATTGAAGGCTGAAATGGAAAGTCTATATGATGAAGAATGCAGGCTCGATTATGACATAAGAGAAAAGCAAGGGAGGTTGAGGGCCCTGGATGAAGATGAAAATTGTCGAAAGTTTCTCTTTTTGACTGAAGAAGATATCATGAACCTCCCATGCTTTCAGAATAAGACACTTATTGCAATAAAAGCTCCTCAGGCAAGTTCGCTTGAAGTTCCCGATCCTGATGAGGATGCCGATTATCCACAACAGCAATTTCGAATCATTGTTAGAAGCACCACAGGACCAATTGATTTGTACCTAGTGAGTAAACACCAAGGGAGGCTTGAGGATATAATTGTCAAGCGGATTCCATCAATGGATTTGTCTATGGGGAATAGTGACTACAAAAGTGGAACTGCATTGCTGTCAAAAGTCCAACATACAGGGTTGATGACGCAGGCAGGACAAGACCAAGATAATCGAAATAGTTCTTCTGATTCGTTCAGCTTGCCAGGCCCTATGACTGGGCTTCAGAAGATCGTCCCCTTAGATGCTAATATTGATGATGATTACTGGTTCCGGTCGGATCTTGAAATCAGCATTACAGATTTGTGGGCAAATGAGGATTGGGCCCAAGTGGGAGAACACATTCAAGATGAGTTTTCAATGAGTAGTGGTGCAGCACTAGCAGTCTCAGATGCCACCAGGTGGTGTTCCCGAAAAAAGAGAGATTGA 1467 0.439 MSVSGEGSNPSNPQFQLQSQSPSPQILGPLKRHFPFSSPKPPSFSFSSSSPSFDSQRFLRTGGGGSRKEEKIFARIPLKQTNETDDHEAQIGEWVTSQGQMETVNNPLSSVSGTGGKRNRTGDYGPLTPISGSGGKRYGRSKVSKHTISGPPTPESNAGSPSNILNPASSCRYDSSLGLLTKKFISLIVEAKDGILDLNKTADILEVQKRRIYDITNVLEGIGLLEKMSKNNIRWKGLDMSRPRELDDQVTRLKAEMESLYDEECRLDYDIREKQGRLRALDEDENCRKFLFLTEEDIMNLPCFQNKTLIAIKAPQASSLEVPDPDEDADYPQQQFRIIVRSTTGPIDLYLVSKHQGRLEDIIVKRIPSMDLSMGNSDYKSGTALLSKVQHTGLMTQAGQDQDNRNSSSDSFSLPGPMTGLQKIVPLDANIDDDYWFRSDLEISITDLWANEDWAQVGEHIQDEFSMSSGAALAVSDATRWCSRKKRD* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02123 488 FunFam E2F transcription factor 1 166 239 - -
Eupl03g02123 488 Pfam E2F transcription factor CC-MB domain 253 353 IPR032198 GO:0046983
Eupl03g02123 488 Gene3D - 244 355 - -
Eupl03g02123 488 SUPERFAMILY "Winged helix" DNA-binding domain 172 235 IPR036390 -
Eupl03g02123 488 MobiDBLite consensus disorder prediction 146 163 - -
Eupl03g02123 488 Pfam E2F/DP family winged-helix DNA-binding domain 174 237 IPR003316 GO:0005667|GO:0006355
Eupl03g02123 488 MobiDBLite consensus disorder prediction 1 73 - -
Eupl03g02123 488 SMART E2F_TDP_2 172 237 IPR003316 GO:0005667|GO:0006355
Eupl03g02123 488 MobiDBLite consensus disorder prediction 1 26 - -
Eupl03g02123 488 Gene3D - 166 239 IPR036388 -
Eupl03g02123 488 SUPERFAMILY E2F-DP heterodimerization region 248 354 IPR037241 -
Eupl03g02123 488 MobiDBLite consensus disorder prediction 104 163 - -
Eupl03g02123 488 PANTHER TRANSCRIPTION FACTOR E2F 121 455 IPR015633 GO:0000978|GO:0006357
Eupl03g02123 488 CDD E2F_DD 248 355 IPR032198 GO:0046983
Eupl03g02123 488 MobiDBLite consensus disorder prediction 40 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02123 Eupl-Chr3 51047060 51057386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02123 128 473 E2F-DP Transcription Factor Family AT5G22220 50.413 3.22e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Eupl03g02123 E2F_CC-MB 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02123 K06620 - nnu:104595891 513.072