Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02101 ATGGCTTCTGTTGAAGAGAAGATCAAAACAGGGGTGGGCTTGGTGAATGGGGCACCTACTCTGCTTGAGGATATGAAGTTTTTGAAAGAGTTTCAGGATCAGTCTGGGGCGAGGAAGACTATAAACTCCGAGCTTTGGCATGCCTGCGCTGGGCCCCTTGTTTCATTGCCTCAAGTTGGCAGCCTTGTATACTACTTTCCCCAAGGACACAGCGAGCAGGTGGCAGTTTCAACTAGAAGAACAGCAACATCACATATCCCTAACTACCCAAATCTCCCATCTCAGTTGATGTGCCAGGTTCATAATGTTACATTACATGCTGACAAAGAGACGGATGAGATCTATGCCCAAATGACTCTCCAGCCGGTGAACTCTGAAAAAGATGTCTTCCCAATTCCGGATTTTGGATTAAAGCCAAGCAAGCATCCAAGTGAGTTCTTCTGCAAGACTTTGACTGCGAGCGACACTAGCACACATGGTGGCTTCTCAGTGCCTCGTAGGGCAGCAGAGAAGCTCTTTCCCCCCTTGGATTTTTCAATGCAACCTCCAACTCAGGAACTAGTTGTCCGAGACTTGCACGATAATTCATGGACATTTCGTCACATATACCGCGGGCAGCCAAAGAGACACCTTCTAACAACTGGTTGGAGTTTGTTTGTGGGTGCAAAAAGGCTTAGAGCTGGTGATGCTGTTCTATTTATCAGGGATGAAAAGTCACAATTACAGTTGGGTGTGAGGCGTGCAAATCGTCAGCAAACAGCATTACCATCATCCGTTCTCTCTGCTGATAGCATGTACATTGGAGTCCTTGCAGCTGCAGCTCATGCTGCAGCTAATCGAAGCCCATTTACCATTTTCTACAATCCGAGAGCATGCCCTTCAGAGTTCGTCATTCCTTTGGCCAAATACCAAAAAGCTGTATATGGCCCCCAGGTTTCAATTGGAATGAGATTTGGAATGATGTTTGAAACTGAAGAGTCGGGTAAGCGCAGATACATGGGAACAATTGTTGGTATTAGCGACTTAGATCCACTGAGATGGCCTAGTTCCAAGTGGCGTAATCTTCAGGTGGAATGGGATGAACCTGGATGTGGTGAAAGACAGAACAGGGTTAGCTTATGGGAAATTGAGACTCCTGAAAGTCTTTTCATTTTTCCTTCCCTGACTTCTAGTCTCAAGAGACCGCTGCTTCCTGGATTTGTGGGAGCTGAAACTGAATGGGAGAATCTGTTCAAAAGGCCTTTTGTTCGGATCCCAGAAAATGGAAATGGTGATCCCCCATACCCTCCAATTCCAAGTCTTGGGTCAGAGCAACTGATCAAGATGCTACTCAAACCTCAAAGTGTTAGTCCTGTTGGAGCCTTTTCTTCTGCCTTACCAGCTTGTGTTATTAGGGGAACTCCTCAGCAAGAGGGAGAGACACTCACAAAGACATCAACCCAGCAAAAACCTCAGATTATCTCTTTGCAAAATACTTTGCTACAAAATCAGAACCCTCCTCAGAACTGCCTCGACCACCTTCATGCTTTGGATGCAAATTTAGTATCACAGGTACCTATATCTGAAAAAGTTCAGCCTCTAAATAAAGTTGAAAATCAACTACCACACAAAACACATATTGAGAAATCAGAAATAGCACCTGTGGTTGCATCAGATCAGCTGAGCCAGTTGACTTCCTCGGGGAAGTGCAGTGAAGACAAATCGGTTGGGAGCCCTATGAATCACCAAAACCTTGTGAATCAGCTACTGTTCCTGAACCAGGGACCGTTGCAGGTGCAGACAGGTCTGCCATTTGTGCACCAGCAGTTGGAACCCATTACTGCCCACTCACATCAAATTGATGCACCCCAATTGGAGACAAGTAATCTAAATGGCTTACTGCCGTACCCAAGCAACCTCCCATCTCAGTACTTGGATGTGGATGATTGGATTTTGCACCCTTCTACCAGTCAACCTCTTGCCGGAATTCTTAAATCACCAGGACCTCTATCTGGGTTTGGAAAGCAAGACACATCAATAGTGTACCCAGAAATGGTTAACCCAATAGTGCCTTCATTGGGTCAAGAATTGTGGGGCCCTCAACTGAATTACCTTCGATATTTATCTGAAGCAGAAGAACTTGCCCCATGCCCTCAACAAGATCAAACAACCATTCAGAGTGCCTCTAATTCATGTGGACTGAGAGATTTCTCCGGGAGTAATGATCAAAGTGAGATTTGCAATGTTCTACATCTTGAAGTAAACAATGGTGGAAGCACAATTGTTGATCCTTCCGTTTCGAGAGCAGTTTTGGACGGGTTCAGTACTTTAGGGGATGCTGGTTTCCAGAATCCTTCGGATTGTTTCCTTGGTAACTTCAATTCAACCCAGGATGTCCAGTCTCAGATTACCACTGCAAGCTTGGCTGACTCTCAAGGCTTCTCTGTGCAAGAGTTTCCAGACAACTCAGGAGGTTCTTCGAGCAATGTGGATTTTGATGAGAGTAGCCTTTTGCCGAAAAGCTCATGGCAGCAAGTTTCTCCACCTCTGCGAACATATACAAAGGTCCAAAAGCTAGGATCAGTTGGGAGATCAATCGATGTTACAAGGTTTAGAAACTACGAGGAGCTGTGCTCTGCAATTGCATGCATGTTTGGCCTGGAAGGGCTGCTCGATGATCCAAGAGGTTCAGGATGGAAACTTGTTTATGTTGATTATGAGAATGACGTTCTTCTTGTTGGGGATGATCCTTGGGAGGAGTTCGTTAGCTGTGTTCGGTGCATCAGAATTCTATCACCTTCTGAAGTTCAGCAAATGAGTGAAGATGGGATGCAGCTTCCCAACAACACGGTAATTTAG 2838 0.4553 MASVEEKIKTGVGLVNGAPTLLEDMKFLKEFQDQSGARKTINSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTRRTATSHIPNYPNLPSQLMCQVHNVTLHADKETDEIYAQMTLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDFSMQPPTQELVVRDLHDNSWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDAVLFIRDEKSQLQLGVRRANRQQTALPSSVLSADSMYIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYQKAVYGPQVSIGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPSSKWRNLQVEWDEPGCGERQNRVSLWEIETPESLFIFPSLTSSLKRPLLPGFVGAETEWENLFKRPFVRIPENGNGDPPYPPIPSLGSEQLIKMLLKPQSVSPVGAFSSALPACVIRGTPQQEGETLTKTSTQQKPQIISLQNTLLQNQNPPQNCLDHLHALDANLVSQVPISEKVQPLNKVENQLPHKTHIEKSEIAPVVASDQLSQLTSSGKCSEDKSVGSPMNHQNLVNQLLFLNQGPLQVQTGLPFVHQQLEPITAHSHQIDAPQLETSNLNGLLPYPSNLPSQYLDVDDWILHPSTSQPLAGILKSPGPLSGFGKQDTSIVYPEMVNPIVPSLGQELWGPQLNYLRYLSEAEELAPCPQQDQTTIQSASNSCGLRDFSGSNDQSEICNVLHLEVNNGGSTIVDPSVSRAVLDGFSTLGDAGFQNPSDCFLGNFNSTQDVQSQITTASLADSQGFSVQEFPDNSGGSSSNVDFDESSLLPKSSWQQVSPPLRTYTKVQKLGSVGRSIDVTRFRNYEELCSAIACMFGLEGLLDDPRGSGWKLVYVDYENDVLLVGDDPWEEFVSCVRCIRILSPSEVQQMSEDGMQLPNNTVI* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02101 945 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl03g02101 945 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Eupl03g02101 945 Gene3D - 145 248 IPR015300 -
Eupl03g02101 945 SUPERFAMILY DNA-binding pseudobarrel domain 134 276 IPR015300 -
Eupl03g02101 945 Pfam AUX/IAA family 845 931 IPR033389 -
Eupl03g02101 945 SMART B3_2 147 249 IPR003340 GO:0003677
Eupl03g02101 945 FunFam Auxin response factor 145 249 - -
Eupl03g02101 945 Gene3D - 841 933 - -
Eupl03g02101 945 FunFam Auxin response factor 311 383 - -
Eupl03g02101 945 FunFam Auxin response factor 839 933 - -
Eupl03g02101 945 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 38 934 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl03g02101 945 ProSiteProfiles PB1 domain profile. 844 928 IPR000270 GO:0005515
Eupl03g02101 945 SUPERFAMILY CAD & PB1 domains 860 923 - -
Eupl03g02101 945 Gene3D - 311 383 - -
Eupl03g02101 945 CDD B3_DNA 146 247 IPR003340 GO:0003677
Eupl03g02101 945 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02101 Eupl-Chr3 50589515 50596527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02101 20 945 B3 DNA Binding Superfamily AT1G19850 59.192 0.0 1022
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl03g02101 AUX_IAA 4.2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02101 K14486 - nnu:104607475 1461.43