Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02092 ATGTCTCCCCTTCCCAAAACGTATCCTTTCCTAATTAAGTCGAATAGCTTTGTTGAAGGAGTAGATCACCAAATAAGGCGTCAAATCAAGGAATTGGAGAGGGTTTCATTTTTAGTCATTTATTTTGAAAGGTTCTCGCGCCGATTTCGTAGTCTAGGGTTTCTCTGCAAATCTAGAACTCGAGTCAAGAGAACCAGAGCAATTCGAATCGAAGGAGTGAGTTTAAGGCTTGAAACAATGGCGATGGGTATGATGAAACCTGTGAAGCCTGGTCTAGAAGAAACACAGGAGGACCTGCATCGCATTAGGATTACTCTTTCATCTAAGAATGTAAAGAATCTCGAGAAAGTCTGCACTGATCTTGTGAGTGGTGCGAAGAACAAAAGGCTGAAAGTGAAGGGACCAGTAAGGATGCCGACAAAAGTTTTGAACATCACTACCAGGAAATCTCCCTGTGGGGAAGGTACAAACACCTGGGATCGTTTTGAGCTGCGTGTTCACAAGCGGGTTATCGATCTCGTGAGTTCATCAGAAGTTGTGAAACAGATCACATCAATCACGATCGAGCCAGGCGTCGAGGTGGAGGTGACCATCGCAGATCCATGA 606 0.4455 MSPLPKTYPFLIKSNSFVEGVDHQIRRQIKELERVSFLVIYFERFSRRFRSLGFLCKSRTRVKRTRAIRIEGVSLRLETMAMGMMKPVKPGLEETQEDLHRIRITLSSKNVKNLEKVCTDLVSGAKNKRLKVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLVSSSEVVKQITSITIEPGVEVEVTIADP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02092 201 ProSitePatterns Ribosomal protein S10 signature. 125 140 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl03g02092 201 NCBIfam 30S ribosomal protein S10 100 198 IPR005729 GO:0003735|GO:0006412|GO:0015935
Eupl03g02092 201 PRINTS Ribosomal protein S10 family signature 136 151 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl03g02092 201 PRINTS Ribosomal protein S10 family signature 158 172 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl03g02092 201 PRINTS Ribosomal protein S10 family signature 101 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl03g02092 201 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 74 200 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl03g02092 201 SMART Ribosomal_S10_2 103 197 IPR027486 -
Eupl03g02092 201 Gene3D Ribosomal protein S10 domain 87 200 IPR036838 -
Eupl03g02092 201 FunFam 40S ribosomal protein S20 86 200 - -
Eupl03g02092 201 Pfam Ribosomal protein S10p/S20e 103 197 IPR027486 -
Eupl03g02092 201 SUPERFAMILY Ribosomal protein S10 101 198 IPR036838 -
Eupl03g02092 201 Hamap 30S ribosomal protein S10 [rpsJ]. 99 198 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02092 Eupl-Chr3 50471585 50481550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02092 80 200 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 84.298 4.32e-69 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02092 K02969 - ming:122073159 234.187