Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02087 ATGAGAACTAGAAATGCCGAAACCCCCAAATCGGTACCAATCAAGAAGACCCCGGTGAAGAAAACCCCTCCGAAGCCTACCGAATCGGCCACGCCGAAGTCCACAGACACACAGACAAAGGCTTCCTCTACAACCGGACCAAAACAGTCGAAGATCAGTCCGGTCGCGAAAACAATGACGCCGAAGACCGCTTCGAAGCCCGAAGCCAAAGAGGCAAGTGCATCTGTTGAGGCTGCTCAGGCAACACCAGAAGCGAAAGCAGTTCAGGCTGCTAAATCTGCAGTGAAGAAAACACCTGGAAAAATTAAATATCCAGCTGCGGTTAAAGCTGTGACTAGGAAGAGTCCCAAATCAGTTGAGATGGTAAAAGTGGAGGTTGAAGTCTCACCAAAGAAGAAAGACACCATTAGTGCAAATGTTGATAAATCCACGAAGAAGGAAGAACCTGTTGCCGCAAAGGTCGGGGGATCTCCAAAGAAGGAAGAAGCAATTGCGGCAAAACTTGTAGAATCTCCCAAGACGGAAGAACCCATTGTTGTGAAGGAGGATGAGGATGTGAAGGAAGAAGAGGAAGCGGTTGAGGATACGAAGGAGCCTGTGAGTAACCCAATTAATATGGAAGAAGACCCTGAGGAGGATATTGAAGGCAAAGACGCTCAACCCGAGGAAGATGGGCATGGTGTCGATGAGGAGATGGAGGATTGTGACGAGGAAGAGGGATTTGAAGTACCTGGGGATGAAGAGTGCACGGAAGATGGCATGTCGGAGCCAGACGGTGAAGCTGGAGGATTGGAAGAGGAACAGATTGAAATATCGTCTCTTGCAAAGGAGAGGAAGATAACGAAAGATCAAGAGATCTTTGTTGGTGGGTTGGACCGTGATGCTGTGGTGGATGATGTTAAGAAGGCATTTGAAAAGATTGGAGAGGTTCTTGAAGTTCGGTTGCACATGAATCCATTGACCAATAAGAACAAAGGGTTCGCATTTGTGAAGTTTGCTGATAAGGAGCAAGCAAGCCGGGCTTTATCTGAGTTAAAAAATCCTGTTATACGTGGGAAGCGGTGTGGGACTGCTCCCAGCGAGGACAACGATACAGTGTTCTTGGGCAATATTTGCAATACCTGGACAAAGGAAGCTATCAAGCAAAAGCTGAAGGAATATGGAGTTGAAGGTGTTGAGAACATTACTCTTGTCCCGGATGCACGACATGAAGGTTTGAGTCGGGGTTTTGCCTTCCTTGAGTTCTCTTGCCATGCTGATGCAATGCTTGCGTACAAGCGGCTCCAGAAGCCAGATGTTATTTTTGGCCATGCTGAGAGGACTGCCAAAGTGGCTTTTGCTGAACCGATACGTGATCCGGACCCAGAGATTATGGCCCAGGTTAAGTCAGTATTTGTGGATTGGCTTCCTTCCCACTGGGACGAAGAACATGTTAAGGAGCATTTTCAAGAGTACGGGGAAATTGAACGTATTGTGCTAGCCCGGAACATGCCTACAGCCAAGAGGAAGGATTTTGGGTTTGTTGATTTTACTACTCATGAAGCTGCTGTTGCATGCATTGACAGTGTAAATAACACAGAATTGGGTGATGGGAAGTCAAAGACGAAAGTGAAAGCGAGGCTTGCAAATCCTTTGCCCAAGACTCAGGCTGTGAAGGGTGGAATGTGTGGTGGATTTCGAATTGGTCATGCTGGTAGTGGAACATTTTCTAGATTTGGGAGAGGGTTTGGACGAGGTGGACGTCCTTTCAACAGTGTGAATTTTCAACGTGGGAAGGGTTTCTATCCGCATGGAAGTGGTCGAACTCCAAGATTTGCTTCTGCAGGTGACAATTATCTGGAAAACCCCTATTCAGAGTTTCGCGGAAGGCGACCTTTTGGTGGACAAGGCGGAAGAAGGGGGTCTGGTGGAGAATTTGCATCCCGAGGTGCTACTTCGTCGAGACCTGATCTGAGTAGGCCCAGGCATGGTGTCCCTGGGAGAGGTCGTGGGAAGTTCATGCAGTCTAGGAGACTACCGTTTTCGTCAGAAGGAGACTATAGCCGCCCTTTTGGTGGTAGGCACTTTGTCGATGACCCTTATCTGTACACTGACAGTGGACATGGGATAAAACGACAATTTTCATTGATGGACAACGAGCCTGGTTACTTGGAGCCTAGCAGACTGCGTCCTCGATTTGATCATCCTGATCCAGTAGTATCGTCGCGCGAAACTCGTTATCGAGATTCATTTGGAACTGGAAGTGATGTCTATTCCTATGATTATTATGGTTCGGATTATGGTGTTAGTGCATATTCACCCATGTACGGGAGTGATCGTTCATTTGGAGGTGGCTATTACTATTAG 2346 0.4757 MRTRNAETPKSVPIKKTPVKKTPPKPTESATPKSTDTQTKASSTTGPKQSKISPVAKTMTPKTASKPEAKEASASVEAAQATPEAKAVQAAKSAVKKTPGKIKYPAAVKAVTRKSPKSVEMVKVEVEVSPKKKDTISANVDKSTKKEEPVAAKVGGSPKKEEAIAAKLVESPKTEEPIVVKEDEDVKEEEEAVEDTKEPVSNPINMEEDPEEDIEGKDAQPEEDGHGVDEEMEDCDEEEGFEVPGDEECTEDGMSEPDGEAGGLEEEQIEISSLAKERKITKDQEIFVGGLDRDAVVDDVKKAFEKIGEVLEVRLHMNPLTNKNKGFAFVKFADKEQASRALSELKNPVIRGKRCGTAPSEDNDTVFLGNICNTWTKEAIKQKLKEYGVEGVENITLVPDARHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIRDPDPEIMAQVKSVFVDWLPSHWDEEHVKEHFQEYGEIERIVLARNMPTAKRKDFGFVDFTTHEAAVACIDSVNNTELGDGKSKTKVKARLANPLPKTQAVKGGMCGGFRIGHAGSGTFSRFGRGFGRGGRPFNSVNFQRGKGFYPHGSGRTPRFASAGDNYLENPYSEFRGRRPFGGQGGRRGSGGEFASRGATSSRPDLSRPRHGVPGRGRGKFMQSRRLPFSSEGDYSRPFGGRHFVDDPYLYTDSGHGIKRQFSLMDNEPGYLEPSRLRPRFDHPDPVVSSRETRYRDSFGTGSDVYSYDYYGSDYGVSAYSPMYGSDRSFGGGYYY* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02087 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 354 IPR000504 GO:0003723
Eupl03g02087 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 366 434 IPR000504 GO:0003723
Eupl03g02087 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 530 IPR000504 GO:0003723
Eupl03g02087 781 Gene3D - 178 357 IPR012677 -
Eupl03g02087 781 MobiDBLite consensus disorder prediction 225 265 - -
Eupl03g02087 781 MobiDBLite consensus disorder prediction 137 266 - -
Eupl03g02087 781 MobiDBLite consensus disorder prediction 137 155 - -
Eupl03g02087 781 CDD RRM_SF 366 429 - -
Eupl03g02087 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Eupl03g02087 781 FunFam Heterogeneous nuclear ribonucleoprotein Q 449 599 - -
Eupl03g02087 781 SUPERFAMILY RNA-binding domain, RBD 285 356 IPR035979 GO:0003676
Eupl03g02087 781 Gene3D - 451 559 IPR012677 -
Eupl03g02087 781 Coils Coil 264 284 - -
Eupl03g02087 781 MobiDBLite consensus disorder prediction 1 100 - -
Eupl03g02087 781 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 73 781 - -
Eupl03g02087 781 MobiDBLite consensus disorder prediction 619 668 - -
Eupl03g02087 781 MobiDBLite consensus disorder prediction 163 181 - -
Eupl03g02087 781 FunFam Heterogeneous nuclear ribonucleoprotein Q 364 448 - -
Eupl03g02087 781 CDD RRM_SF 286 355 - -
Eupl03g02087 781 CDD RRM_SF 464 530 - -
Eupl03g02087 781 SMART rrm1_1 285 358 IPR000504 GO:0003723
Eupl03g02087 781 SMART rrm1_1 463 538 IPR000504 GO:0003723
Eupl03g02087 781 SMART rrm1_1 365 442 IPR000504 GO:0003723
Eupl03g02087 781 SUPERFAMILY RNA-binding domain, RBD 362 534 IPR035979 GO:0003676
Eupl03g02087 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 449 IPR000504 GO:0003723
Eupl03g02087 781 Gene3D - 363 448 IPR012677 -
Eupl03g02087 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 544 IPR000504 GO:0003723
Eupl03g02087 781 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02087 Eupl-Chr3 50354893 50367641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02087 283 530 Eukaryotic Initiation Factors Gene Family AT1G71770 24.904 7.35e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02087 - - ming:122083305 855.129