Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02084 ATGTCTGCTTCTGTTGAAGGCGAAGTTGCTGTAACGGTCGAGCAACCGGCTGCAGAGGTTGCAGCTGCGGAGCAGCCTCAGCAACCTGAGAAGCCGGTGAAGGAGAAAAAGCCTAAGGCTCCGAAGGAGAAGAAGCCCAAGTCGGCGAAGGCTTCTCACCCTGCTCATCCTCCGTACTTCCAGATGATCACGGAAGCTCTGATGGCCCTAAGCGAGAAGAGCGGTTCGAGCCCGTATGCCATTGCTAAGTACATGGAAGAGAAGCACAAAGCAGTTCTGCCTGCAAATTTCAAGAAAAGGTTGGCTCTACAGTTGAAGAACTGTGCTGCGAAGGGGAAACTGATCAAGATCAAGGCCTCCTATAAGCTTTCTGAAGCGGGCAAGAAAGAGAACATTTCAAAGGCAAGTCCGAAGACTGTCGCTGAAAAGAAGCCTAAATCAGCTGCTGCTCCCAAGGCTAAAGTTGCAAAGAAAAAGGAGACGGGGAAGGTAGCGAAGACAAAGCGTTTAAGTCAGGTTAAGACTCCAGAATCTTTGAAGCCCACAAAGAAAGTTGGTGCGAAGAAGACGAAGAAAACGGCTCCTGCCAAACCCAAGCAGCCGAAATCAATCAAATCTCCGGCTGCGAAGAAAGCTAGGAAGGCCACTGCATGA 654 0.5031 MSASVEGEVAVTVEQPAAEVAAAEQPQQPEKPVKEKKPKAPKEKKPKSAKASHPAHPPYFQMITEALMALSEKSGSSPYAIAKYMEEKHKAVLPANFKKRLALQLKNCAAKGKLIKIKASYKLSEAGKKENISKASPKTVAEKKPKSAAAPKAKVAKKKETGKVAKTKRLSQVKTPESLKPTKKVGAKKTKKTAPAKPKQPKSIKSPAAKKARKATA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02084 217 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl03g02084 217 PRINTS Histone H5 signature 174 191 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl03g02084 217 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl03g02084 217 PRINTS Histone H5 signature 196 215 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl03g02084 217 PRINTS Histone H5 signature 140 154 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl03g02084 217 MobiDBLite consensus disorder prediction 1 58 - -
Eupl03g02084 217 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl03g02084 217 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl03g02084 217 CDD H15 54 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl03g02084 217 SMART h15plus2 53 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl03g02084 217 MobiDBLite consensus disorder prediction 126 217 - -
Eupl03g02084 217 SUPERFAMILY "Winged helix" DNA-binding domain 52 129 IPR036390 -
Eupl03g02084 217 PANTHER HISTONE H1 22 211 - -
Eupl03g02084 217 MobiDBLite consensus disorder prediction 185 217 - -
Eupl03g02084 217 MobiDBLite consensus disorder prediction 126 160 - -
Eupl03g02084 217 Gene3D - 50 135 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02084 Eupl-Chr3 50312878 50314349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02084 57 123 Single Myb Histone (SMH) Gene Family AT1G72740 38.806 2.60e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02084 K11275 - nnu:104602052 153.295