Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02064 ATGAAAGGAATTATGCGAACACTTTGCGACGTTTGTGAGAGCGCTGCGGCTATCCTTTTCTGCGCTGCCGATGAGGCTGCTCTTTGCCGCTCCTGCGACGACAAGGTTCACATGTGTAACAAGCTTGCTAGCCGACACGTGCGGGTTGGGCTTGCTGCCCCCAGCGATGTTCCTTGTTGTGACATATGTGAAAATGCACCTGCATTCTTTTACTGTGAGGTAGACGGCAGTTCCCTTTGCTTGCAATGTGATATGATTGTGCACGTTGGAGGTAAAAGGACCCATGGTAGATATCTCCTATTCAGGCAGAGGGTTGAGTTTCCAGGGGATAAATCCGGCCATTTCGAAGACCTGGCCTTGCAACCCATGGGTCCTGGTGAGATTAGGAGCGAACCAAATCATCCATTTAAACTGACAACAAGAGAGAACCTGCAAAATCACAGGGTCTCTCCTGTTCCGATGCTAGATGCTAACAATGATGACCATCACATGAAGGAATCTAAAATGATTGATCTCAACACCAGGCCAAACCGGATACATGGGCAAGCTTCAAATAACCAGGGGATGGATGTTCTAAGTGGCAGTAATCATGAATCTGAAAGCATGGTTCCTGGGGGCTTTCAAAGGAGAGACTGA 636 0.4827 MKGIMRTLCDVCESAAAILFCAADEAALCRSCDDKVHMCNKLASRHVRVGLAAPSDVPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSGHFEDLALQPMGPGEIRSEPNHPFKLTTRENLQNHRVSPVPMLDANNDDHHMKESKMIDLNTRPNRIHGQASNNQGMDVLSGSNHESESMVPGGFQRRD* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02064 211 MobiDBLite consensus disorder prediction 176 211 - -
Eupl03g02064 211 Gene3D Classic Zinc Finger 5 95 - -
Eupl03g02064 211 FunFam B-box zinc finger protein 19 6 96 - -
Eupl03g02064 211 PANTHER B-BOX ZINC FINGER PROTEIN 22 5 182 - -
Eupl03g02064 211 MobiDBLite consensus disorder prediction 177 202 - -
Eupl03g02064 211 CDD Bbox1_BBX-like 8 51 - -
Eupl03g02064 211 CDD Bbox1_BBX-like 59 100 - -
Eupl03g02064 211 Pfam B-box zinc finger 7 46 IPR000315 GO:0008270
Eupl03g02064 211 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
Eupl03g02064 211 ProSiteProfiles Zinc finger B-box type profile. 4 51 IPR000315 GO:0008270
Eupl03g02064 211 SMART bboxneu5 55 100 IPR000315 GO:0008270
Eupl03g02064 211 SMART bboxneu5 4 51 IPR000315 GO:0008270
Eupl03g02064 211 ProSiteProfiles Zinc finger B-box type profile. 55 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02064 Eupl-Chr3 49978581 49985488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02064 5 211 C2C2-CO-like Transcription Factor Family AT4G38960 60.386 1.80e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Eupl03g02064 zf-B_box 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02064 - - nnu:104607513 340.117