Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02054 ATGGAAGAAGAAGAAGAAGAAGGTTCGGGCGTTTACAGACCTCAGCAAGTCAAGCATTCTAACGAGGAGGAGAAGTTGCAGGAGGTCGAGGAGTTCTCGAACACTGAACAACAATGCGAAGCTGTACCTGAAATGGACGATTCACAGCTTGTTATAGGCTCTCCTGTTGTCGCAAACGAACCTGCGGATGTGGCAGAAGAAGCTACTCCGGAGGTTGCAGAAGAAGCTACTCCGGAGGTTGCAGAGGAAGCTACTCCGGAGGTTGCAGAAGAAGCTACTCTGGAGGTTGCAGAAGAAGCAACGCACATGGCGGAAATGGAGATGGAGACGGAGACGGAGGTTGCGGAGACGAGCAGAGGTGGCGGGAAGCGCAAGCGTGGGCGGCTGAATAGGGTTCAGACGAAAGCCCCAGCGAAGAAGAATGAAGAGGAGGACGTTTGTTTCATTTGCTTCGATGGTGGGAACCTCGTCCTCTGTGATCGTCGGGGCTGCCCTAAGGCGTACCATCCTGCTTGTGTTAATCGGGATGAAGCATTCTTCCGTTCCAGGGGTCGCTGGAATTGCGGTTGGCATATATGTAGCAACTGTGAAAAGGCTGCCCATCATATGTGTTATACATGTACGTTTTCCTTGTGCAAGGGGTGCATTAAAGAAGCTGGATTTTTATGTGTTAGAGGAAACAAAGGCTTTTGTGAGGCATGCATGAGAACCGTAATGCTGATTGAAAAGAATGCCCAGGGAAACAAGGAAATGGCTCAAGTAGATTTTGATGACAAAAATAGCTGGGAGTATCTCTTCAAGGACTACTGGATAGATTTGAAAGGGAAGCTATCATTAACTTCAGATGAGCTTACCCAAGCTAGAAATCCATGGAAAGGATCTAGTGTTTTGGCTCATAAAGTGGAATCGTTCGATGAACTATATTATGCCAAAGATGAGCAAGGTTCTAATTCAGATAGTTCTTCCGGGCATCTTGAAGTAAGAAATTCTAAAAGAAGAAAGGCCAAGAGACAGTCAAAGTCCTCCAAGGATGAGGGTTCTCCCAGTATGGCAAGAGCTGTTGATGGTGAAGGGACCTCTATGTTAGACAACTCTGAATGGGCTTCGAAAGAACTCTTGGAGTTTGTTGCGCACATGAAAAATGGTGATATATCTGTTTTATCTCAGTTTAATGTCCAGGCTCTCTTGCTAGAATATATAAAACGAAACAACCTTCGTGATCCTCGTCGGAAGAGTCAAATAGTTTGTGATTCAAGGCTAGAAAATCTGTTTGGGAAAGCACGTGTGGGGCATTTTGAAATGTTAAAGCTTCTTGAATCACACTTTCTTATAAAAGAGGATACTCAGGCAGATAGTCAAGGGGGAATTGTTGATACTGAGCCTAGTCAGTTGGAGGCTGAAGGTAGCAGTGATGGGCTGACAAAGGCGGGTACAGATAAGAGACGTAAAACACGTAAAAAGGGTGAGGGGAAAGGACCACAGACTAATCTTGATGATTATGCAGCAATTGATGTCCACAACATTAGGTTACTTTACTTGCGACGCAACTTGATGGAGGATTTACTTGAAGATAACGACAAGTTCAATGACAAGGTTATTGGATCTTTTGTAAGAATAAAGATTCCTGGCTCGGGTCAAAAGCAAGAGTTGCATAGGCTAGTTCAAGTTATAGGTACAAGTAAAGCTGCGGAACCATATGAAACTGGTAAAAGGACTACGGATTTCATGCTGGAGATATTGAATTTAAATAAGACAGAGATAATATCAATTGATATAATTTCAAATCAGGAGTTCTCTGAGGATGAATGCAAGCGTTTACGTCAGAGTATAAAATGTGGACTAATTAGCCGAATGACTGTGGGCGAGGTTCAGGAGAAAGCCATGGCCGTCCAGTCAGTGAGAGTCAATGACTGGCTGGAAGCGGAGATATTGCGACTTAGTCATCTTCGTGATCGAGCAAGTGAAAAGGGGCGTAGAAAGGAGCTTAGAGAATGTGTGGAAAAAGTGCAGCTTCTGAAAACACCTGCGGAACGTGTGCGTAGACTGCAGGAAATTCCTGAAGTACATGCTGACCCAAATATGGATCCAAGTTACGAGTCTGAAGAGGATGGAGGAGAACCAGATGATAAAAGACGAGACAACTACATGAGACCAAGAAATGCTGGATTTAGTAGGAACGGGAGGGAGCCAATCTCTCCAGGAAAAGGAAGTTCTGCTTCAAATGATGCTTGGAGTGGAGCAGGGAAAAATTCAACCCCCACCTGGGAGCCAAGTGGAAATATGTCCACAAAAGCTGTATGGGTCAAAGGAGTTAGTACTACTGGTGCTGGTGAGAGAATGAACGAATCCTCATGGAGTCAAGGAAGGGATGCACACCAGTCAAACAGTTGGGAGAAGCCCAAAAACCAGGTGCCTTCAACTGATTCGGATACTAGTGCTTGGAATGGCCAAGCTGGGTCATCTTCTGGGATTGCACAGGAAGCACTGGCACCTCTTTCTACAGGGGGAGCATTGTCGTCCAACATCAGTGAGACAGACAAAATGTGGCACTACCAGGACCCATCTGGGAAAATCCAAGGTCCCTTTTCTATGGTGCAGCTGCGTAAGTGGAGTACAACTGGGTACTTCCCAGCAGATCTGAGGATATGGAGAACGACAGAAAAGCAAGAGGACTCTATAAAGTTGACTGGTGCATTGGATGGGAAGTTCCAGAAAGAGCTGCCACAATGGGGCAACAGCTTTTCACAGCCTGAAACAGGTTCAATTGCATCTGGTAATGATGGGGAAAATAAATTGGATGGTGGCTGGAAAGAGAATATTAATTCAACATGGACAGATAAAAAGCAAAGTGATGGGAGCTGGAACTCAAATTGGAAGGATGCAAGTGGCCCTGCTAATGATAATACTGAATTGACAAAAACTGATGAGTGGGGCTTGAGGTCACCCAGTTGGACTGCACCAACACCAGTATTCAAGGGTGGTCAGGCTGGGTATTCCTCACATGGCTGGGACTCATCGAAGGGCAATAATGCTTGGTCTGGTCACTCGCAAGTGCATAGCCCGCTCCTGTCACCCTCATCTTCTGGGAATCCACATCAACCACCGTACCATCAAGGAAGAGAAGGTCAAGGTGGAGGGAGATGTAACTCAGGTCTGACTCGTGGAAATAGTTGGAATTCAAACACACCCTCGGGGTTTCAGTCTAGTAGTGGGCATGGTTATGAAAGGCGATCCAAACCTGCGAAGCAATGGAGCAATGGAGCACAACAATCTACAGCTGGGGTGACTGAACCTAACAAGATTGCTTCTGGTTGGGGCGAGCAACATCATATTTCTGTAACACCTTCGACTGGGGGATGGGATTCCAATTCTCTGTCTGCTTCTATGCCCATGCCCAAGCCATCTGAAACATCAGGTCAGGGTGACACAACAGATTTCTCGAATCCGCCTACTCCCACCCCAAAGCTGAGTGCTGGAGGTTGGACAAGGGATCAGGGTGCTAAAAACAAATGGGCTGCGGCATCAACTGCTTCTGTTCAGCAAACAAGCGCAGGCTGGGGGAGTGCTTCAAGTCTGGGAGGCAATGGGGCACAGCTATCATCTCTCACAATGAACGAACCTATTAAAGGACCCGCTGAATGGGGTGGACAGTCCCCCACTCCAGCAAAACCTTCTGTTGGGGAATGGGACTTAGGTGCTGGTCCTGCTTCTGCGTTGAATCCAACTGAAATGACCCGTGGTCATGATGTGGCTCCAATTCCTTATAGTGGCCAGCTAACACAATCATCGACTTCACCATCAGTTTCAGTGGAGCCAACTGTGGGGGTAGATGGTTGTGGTGCTTCTCATACATCATCCAGTCAGCAGACAACAGTTTGTGGGCCAAATGCATCTGGTTCCTTGTCTAATCAATCGGTTTCTGGTATGACCATGACAGATGGTAATGTAACATCTTCAGGTGGCTCGACTTCTCCCACTTCAGGAAAAGGTTCTGAGGACTTGATCCAGGGTTCAGAGAACAGTCGTTCAAGTTCAGTACATGGTTCGAGTCCAATTGCTGACCCAGGAATGGGTGGTGTATTAAGCTCTGAGGATGCTCGACAAATTCCTTTTCAATCTACGACAGATGAGCAACATGGGTTCACACAGGTTCTTGATCCTCGAAAGAAGTCTGGAGCACATTCACCTGTGGGTGCTAAAGTGGGTGGGGAAACAAGAACTGATGATGTTTCTTCTAATGTTTCAATGGAAACCCAAGGTTTTGCGCCAGAACCTCTTGCACCTGCTTCAACGAATGCAGCTGTTGACTTGGTGTCTGATGTAATTTCACCATCCAAAATTGTTGATCTGAGCAACGTGACATGGGTTTCATCCGGTAATAGTCACAAGCCTTCAGAAGAACATAATGGATGGGGGTCTGTTTCAGCTCAGAAACCAGAAATGGATCCAAGACCTGGGTTTGCATCTCATGGATGGGGACCTGTTCCAGCTCAGAAACAAGAACCACCTACTTCAAGTCCTACACCTTCACTTGCAGCTCAAAAACCAGAACCAGCTTATGGTCACTGGGGTGATGGCCGATCTTCTGTCCATAATTCTGCTGCATCTTTAAGAACATCTGATCAAGCTGGAAATCATCCTACTGGCCTCCCATTTTCAGACTCAAGTGGCCCATCGAACACAAAGAGCACTGATTGGTCGACATCTTCATCAGGTCCATCGGTGACCAAGCCTTCCAGCTGTGATGTAGGTACTGCATCTGTCTTGAACAGCATTCAAAACAACTCACTGGCCCCATCCGATACTCAGAGATCATCAATGTCTTGTAACCCACTGGAAACAGGTCCAAACATGCAGCCTGCTGTGCCAGCCACCCCAGGTTGGGGCATGGGAGCTAAGGAAAATTCAAGCACTGCTTGGAGACCAACACCTGAAAATTTGAACCCAGGCTGGGGGCCTCCGCAGGGAAATGCAAATATGGGCTGGGGAGGATCAGCACAAGGTAATGCGAACATCGGCTGGGGAGCAGTACCACTGCAAAACACAACTGCTGGTCAGGGAACAATGCCGCCGGGAAATACCAACAGGGGTTCAGATGAACCAGCTGTAAATACAGGCATGTGGGGGAGCCAACAGAAACACAATGGAGACAGATTTTCTGGTCCTTGGGACCGGGGTTTGCATGCTGGAAATACTGTTCATGGTGGTGGCAGGTCGTCATGGAACAGGCAGTTGTCATTTGGCAGTGGAGGTGGGAGAGGAGGATCTTCCAGGCCGCCTCCCAAAGGGCAGAGAGTATGCAAATTCCACGAGAGTGGGCATTGCAAGAAGGGAGCCGACTGTGATTTTCTGCACCCATGA 5361 0.4729 MEEEEEEGSGVYRPQQVKHSNEEEKLQEVEEFSNTEQQCEAVPEMDDSQLVIGSPVVANEPADVAEEATPEVAEEATPEVAEEATPEVAEEATLEVAEEATHMAEMEMETETEVAETSRGGGKRKRGRLNRVQTKAPAKKNEEEDVCFICFDGGNLVLCDRRGCPKAYHPACVNRDEAFFRSRGRWNCGWHICSNCEKAAHHMCYTCTFSLCKGCIKEAGFLCVRGNKGFCEACMRTVMLIEKNAQGNKEMAQVDFDDKNSWEYLFKDYWIDLKGKLSLTSDELTQARNPWKGSSVLAHKVESFDELYYAKDEQGSNSDSSSGHLEVRNSKRRKAKRQSKSSKDEGSPSMARAVDGEGTSMLDNSEWASKELLEFVAHMKNGDISVLSQFNVQALLLEYIKRNNLRDPRRKSQIVCDSRLENLFGKARVGHFEMLKLLESHFLIKEDTQADSQGGIVDTEPSQLEAEGSSDGLTKAGTDKRRKTRKKGEGKGPQTNLDDYAAIDVHNIRLLYLRRNLMEDLLEDNDKFNDKVIGSFVRIKIPGSGQKQELHRLVQVIGTSKAAEPYETGKRTTDFMLEILNLNKTEIISIDIISNQEFSEDECKRLRQSIKCGLISRMTVGEVQEKAMAVQSVRVNDWLEAEILRLSHLRDRASEKGRRKELRECVEKVQLLKTPAERVRRLQEIPEVHADPNMDPSYESEEDGGEPDDKRRDNYMRPRNAGFSRNGREPISPGKGSSASNDAWSGAGKNSTPTWEPSGNMSTKAVWVKGVSTTGAGERMNESSWSQGRDAHQSNSWEKPKNQVPSTDSDTSAWNGQAGSSSGIAQEALAPLSTGGALSSNISETDKMWHYQDPSGKIQGPFSMVQLRKWSTTGYFPADLRIWRTTEKQEDSIKLTGALDGKFQKELPQWGNSFSQPETGSIASGNDGENKLDGGWKENINSTWTDKKQSDGSWNSNWKDASGPANDNTELTKTDEWGLRSPSWTAPTPVFKGGQAGYSSHGWDSSKGNNAWSGHSQVHSPLLSPSSSGNPHQPPYHQGREGQGGGRCNSGLTRGNSWNSNTPSGFQSSSGHGYERRSKPAKQWSNGAQQSTAGVTEPNKIASGWGEQHHISVTPSTGGWDSNSLSASMPMPKPSETSGQGDTTDFSNPPTPTPKLSAGGWTRDQGAKNKWAAASTASVQQTSAGWGSASSLGGNGAQLSSLTMNEPIKGPAEWGGQSPTPAKPSVGEWDLGAGPASALNPTEMTRGHDVAPIPYSGQLTQSSTSPSVSVEPTVGVDGCGASHTSSSQQTTVCGPNASGSLSNQSVSGMTMTDGNVTSSGGSTSPTSGKGSEDLIQGSENSRSSSVHGSSPIADPGMGGVLSSEDARQIPFQSTTDEQHGFTQVLDPRKKSGAHSPVGAKVGGETRTDDVSSNVSMETQGFAPEPLAPASTNAAVDLVSDVISPSKIVDLSNVTWVSSGNSHKPSEEHNGWGSVSAQKPEMDPRPGFASHGWGPVPAQKQEPPTSSPTPSLAAQKPEPAYGHWGDGRSSVHNSAASLRTSDQAGNHPTGLPFSDSSGPSNTKSTDWSTSSSGPSVTKPSSCDVGTASVLNSIQNNSLAPSDTQRSSMSCNPLETGPNMQPAVPATPGWGMGAKENSSTAWRPTPENLNPGWGPPQGNANMGWGGSAQGNANIGWGAVPLQNTTAGQGTMPPGNTNRGSDEPAVNTGMWGSQQKHNGDRFSGPWDRGLHAGNTVHGGGRSSWNRQLSFGSGGGRGGSSRPPPKGQRVCKFHESGHCKKGADCDFLHP* 1787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 106 123 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 67 87 - -
Eupl03g02054 1786 SMART rtf1 502 612 IPR004343 GO:0003677
Eupl03g02054 1786 Pfam SWIB/MDM2 domain 369 442 IPR003121 -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1595 1615 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 999 1034 - -
Eupl03g02054 1786 ProSiteProfiles SWIB/MDM2 domain profile. 361 444 IPR003121 -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 453 469 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1727 1767 - -
Eupl03g02054 1786 ProSiteProfiles GYF domain profile. 846 900 IPR003169 GO:0005515
Eupl03g02054 1786 CDD Bbox1 192 218 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1735 1751 - -
Eupl03g02054 1786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 238 IPR013083 -
Eupl03g02054 1786 SUPERFAMILY SWIB/MDM2 domain 367 443 IPR036885 -
Eupl03g02054 1786 Coils Coil 89 109 - -
Eupl03g02054 1786 SUPERFAMILY GYF domain 841 898 IPR035445 -
Eupl03g02054 1786 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1465 1786 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 913 1414 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1109 1155 - -
Eupl03g02054 1786 FunFam Zinc finger CCCH domain-containing protein 19 503 632 - -
Eupl03g02054 1786 CDD PHD5_NSD 146 191 - -
Eupl03g02054 1786 ProSiteProfiles Plus3 domain profile. 502 635 IPR004343 GO:0003677
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1279 1350 - -
Eupl03g02054 1786 SMART PHD_3 146 192 IPR001965 -
Eupl03g02054 1786 SUPERFAMILY Plus3-like 503 632 IPR036128 GO:0003677
Eupl03g02054 1786 CDD GYF 846 890 IPR003169 GO:0005515
Eupl03g02054 1786 Pfam Plus-3 domain 507 610 IPR004343 GO:0003677
Eupl03g02054 1786 FunFam Zinc finger CCCH domain-containing protein 19 354 449 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1366 1381 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1049 1074 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1529 1582 - -
Eupl03g02054 1786 SMART gyf_5 847 902 IPR003169 GO:0005515
Eupl03g02054 1786 SUPERFAMILY CCCH zinc finger 1761 1785 IPR036855 GO:0046872
Eupl03g02054 1786 SMART swib_2 369 447 IPR019835 -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 312 360 - -
Eupl03g02054 1786 SUPERFAMILY FYVE/PHD zinc finger 142 196 IPR011011 -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1169 1205 - -
Eupl03g02054 1786 ProSiteProfiles Zinc finger C3H1-type profile. 1761 1786 IPR000571 GO:0046872
Eupl03g02054 1786 Gene3D - 503 632 IPR036128 GO:0003677
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 683 822 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1 87 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 776 822 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 106 135 - -
Eupl03g02054 1786 CDD SWIB-MDM2_like 367 442 - -
Eupl03g02054 1786 Gene3D SWIB/MDM2 domain 356 453 IPR036885 -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 8 31 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1456 1582 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 936 981 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1255 1271 - -
Eupl03g02054 1786 FunFam Zinc finger CCCH domain-containing protein 19 136 236 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 704 718 - -
Eupl03g02054 1786 Pfam GYF domain 849 889 IPR003169 GO:0005515
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 731 769 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1082 1098 - -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 1456 1472 - -
Eupl03g02054 1786 Gene3D - 847 905 IPR035445 -
Eupl03g02054 1786 MobiDBLite consensus disorder prediction 453 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02054 Eupl-Chr3 49840456 49870898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02054 141 195 PHD Transcription Factor Family AT2G36720 45.455 2.33e-07 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Eupl03g02054 Plus-3 9.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02054 - - nnu:104607527 1707.58