Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02048 ATGATAGAAAAATCTTCAGTTCTGCTACTTGTCAACGAAAGCTGGCCCGGAGAATGTGCCTTTCGTCGCTTGTTTTTAAAGCATGTCTCGTTCGGCCATTATGAAGGGTGGTTTCGTCATTCGAGAAAGAAAATAATAGAAGGTAATGTTTTACGTGGTATTGTACTTATGATAGTACTATGGATCTCCACCGTACAAGTAATACACAAATGCTTATCAAGACTCCACAAAACAAAAAATGAGCGGGAAAACAAACCAGAAACAGCGGCGATCAACGCGGTAGGCAATTACGAAGAAAAAGCAGGCGAGAGCGGGAGAGATAAACCACGGACGCTTCCGCCATCATTCAATGCTCAACCAAACTCTCCCCTTTCCTTACAATTCAATCCTTCTTCCTCACCTGCAACTTATCCTGCAATTTCTCCCTTCTCTCCTCCTTCAAATCAGGTAAGAATGGAAATGGAGTGGGCAGAAGAAAAAGCGTTGAAAACCAGTCTTAGGCCGGAGAGGACTGGGAAATTGAACCAACAAGTTGTTTATGAGGAATTTTGGGGTGGAAATGGAGCGAATGGTGTCCCTGGAGATGATTTATTTGTTGATGAACTACTTGATTTCTCCAACGAAGATGTTGAAGGGCAAGAAGAAGAAGATGAAGAGAAGGATTGTCTCTCTGTTTCTTCTTCTAAAAAACAGAGCCTCGACTCTAGCAATTTTTGTTTAGAAGATGATTTTGGGTCTATTCCTGGGAGCGAACTCAGCGTTCCGACTGATGAAGTAGAGAACCTTGAATGGTTATCTCATTTCGTGGAGGATTCCTTCTCAGAATTTTCTATGCAATTTCCAGCGGGAAACCTACAAGGGAAAACCCAAACCCCAGACCAGAACCGGTCTGAACCGGAAAGCGGAACTACTTCGTTGAAAATCGCCGGTTTTCCAACCCCAGTTCCGGCCAAGGCGAGAAGCAAACGTTCGAGAACCAGTGGACGAGTTTGGTCACTTGGGTCCCCTTCGTTTACCGAATCCTCGCAATCATCGTCCTCGTCTTCCTCTTCATCATCTTATTCCTCTTGTCTCATCTTTAACCCTGGCCACAACTTCGAATTATTCTACTGTCTTGGAAAACCTCCGGCGAAGAAGCAGAAGAAGAAACATATGACAGTGGCCGGCGGGACCCAGCTACAACGTCGGTGCACTCATTGTGGTGTTCAGAAGACCCCCCAGTGGAGAACCGGTCCATTAGGAGCAAAAACCCTTTGTAACGCTTGTGGGGTTCGCTTTAAATCCGGTCGGCTTTTACCCGAATACCGACCAGCTTGTAGTCCGACTTTCTCGAGCGATGTTCATTCTAACAATCACCGGAAAGTGCTGGAGATGCGGCGGAAGAAAGAGATAACTCGACCAGAACCCGGTTTCGCTCCAGCGGTTCAGAGCTTTTGA 1437 0.4593 MIEKSSVLLLVNESWPGECAFRRLFLKHVSFGHYEGWFRHSRKKIIEGNVLRGIVLMIVLWISTVQVIHKCLSRLHKTKNERENKPETAAINAVGNYEEKAGESGRDKPRTLPPSFNAQPNSPLSLQFNPSSSPATYPAISPFSPPSNQVRMEMEWAEEKALKTSLRPERTGKLNQQVVYEEFWGGNGANGVPGDDLFVDELLDFSNEDVEGQEEEDEEKDCLSVSSSKKQSLDSSNFCLEDDFGSIPGSELSVPTDEVENLEWLSHFVEDSFSEFSMQFPAGNLQGKTQTPDQNRSEPESGTTSLKIAGFPTPVPAKARSKRSRTSGRVWSLGSPSFTESSQSSSSSSSSSSYSSCLIFNPGHNFELFYCLGKPPAKKQKKKHMTVAGGTQLQRRCTHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSDVHSNNHRKVLEMRRKKEITRPEPGFAPAVQSF* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02048 478 ProSiteProfiles GATA-type zinc finger domain profile. 391 427 IPR000679 GO:0006355|GO:0043565
Eupl03g02048 478 MobiDBLite consensus disorder prediction 282 308 - -
Eupl03g02048 478 MobiDBLite consensus disorder prediction 326 351 - -
Eupl03g02048 478 FunFam GATA transcription factor 388 470 - -
Eupl03g02048 478 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 394 454 - -
Eupl03g02048 478 CDD ZnF_GATA 396 453 IPR000679 GO:0006355|GO:0043565
Eupl03g02048 478 MobiDBLite consensus disorder prediction 282 351 - -
Eupl03g02048 478 SMART GATA_3 391 445 IPR000679 GO:0006355|GO:0043565
Eupl03g02048 478 Gene3D - 389 466 IPR013088 GO:0006355|GO:0008270
Eupl03g02048 478 MobiDBLite consensus disorder prediction 79 124 - -
Eupl03g02048 478 PANTHER GATA TRANSCRIPTION FACTOR 188 464 - -
Eupl03g02048 478 Pfam GATA zinc finger 397 431 IPR000679 GO:0006355|GO:0043565
Eupl03g02048 478 ProSitePatterns GATA-type zinc finger domain. 397 422 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02048 Eupl-Chr3 49743900 49746638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02048 158 477 C2C2-Gata Transcription Factor Family AT5G66320 51.642 2.30e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl03g02048 GATA 1.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02048 - - nnu:104602027 396.741