Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02037 ATGGGTAGAGGAAAGATCGAGATTAAAAGAATAGAGAATTCGACGAACAGGCAAGTTACTTACTCGAAGAGAAGAGCAGGGATTATGAAGAAAGCTCAGGAGCTTACAGTTCTCTGCGATGCGGAGGTCTCGCTCATCATGTTCTCCAATACTGGAAAATTATTTGAGTTCATCAGTCCTTCAACCTCAACCAAGAAGATTTTCGATCGGTATCAGCATGCTCAAGGGATCAATCTCTGGAACTCTCACTACGAAAGAATGCAAGATAACTTGAACAGACAGAAGGAAATTAATAATAAGCTCCGCAGAGAAATTAGGCAGAGGATTGGAGAAGAGCTGAACGATCTGAACATCCAGGAGCTGCGCGGTCTTGAGCAAAATTTGGAGAGTTCGTTGAAGATTGTTCGTGATCGAAAGTATCAGGTGATCGGTACTTCTACTGATACGTACCGGAAAAAGGTGAAAAACCTGGAGGAAACACGCAAGAATCTCCTACGCGACTTTGAAATGACTGATGAGGATCCACACTATGCATTAGTTGATCATGAAGGGCAGTATGATGCGATTGGATTGGCGAATGGGGGTTCACACATATTTGCTTTCCGCCTGCAACCAAGCCAGCCCAATCTTCAAGATGGAGGATTTGGCTTGCATGATCTACGTCTTGCTTGA 672 0.439 MGRGKIEIKRIENSTNRQVTYSKRRAGIMKKAQELTVLCDAEVSLIMFSNTGKLFEFISPSTSTKKIFDRYQHAQGINLWNSHYERMQDNLNRQKEINNKLRREIRQRIGEELNDLNIQELRGLEQNLESSLKIVRDRKYQVIGTSTDTYRKKVKNLEETRKNLLRDFEMTDEDPHYALVDHEGQYDAIGLANGGSHIFAFRLQPSQPNLQDGGFGLHDLRLA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02037 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl03g02037 223 Coils Coil 84 104 - -
Eupl03g02037 223 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g02037 223 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Eupl03g02037 223 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Eupl03g02037 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl03g02037 223 Pfam K-box region 81 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g02037 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl03g02037 223 Coils Coil 147 174 - -
Eupl03g02037 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Eupl03g02037 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g02037 223 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Eupl03g02037 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl03g02037 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl03g02037 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02037 Eupl-Chr3 49557365 49560174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02037 1 218 MADS-box Gene Family AT3G54340 50.673 1.61e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl03g02037 K-box 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02037 K09264 - ming:122083852 339.347