Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02029 ATGGCTTCCGATTCTTCTCCAATCCACCAAAACGGAGGTCCTTCCTCTCCCGATGACTCGTATTCGAGCCCCATCGGCAACACGAACTCGTCGCCCGGCGATGCTCACCGAAGGAGGAGCCGGAGACGCTCGTCCACAGCATCAGGCTACGCAACCCCACCTCCTCAGCATTCTCGATTCGCCGCCGCAGATGCCACCCCCACCCCATCTAGCACACAGAGCAGAAGAGGGAGGAAGAGGGCTTCCAGGGGGACCCCGATTGCAACGCCCACATCGACCGACGAGGCCCCACCTTCATCGGAGGCTGGGGAAGGCGACGAAGCCGACGAAGCCCCACCAATGTTTGTGTGGGGAACCAACATTAGCGTTCAGGATGTAAATGCCGCCATCCTCCGGTTCCTGAGGCACTTCCGCGAACAGCCGTCACACACGGAGGGAAAATACATGAGAGCAATTCACCACATTCTTGAAGTGGAGGGGGATTCTCTTGATGTCGATGCCCAAGATGTTTTCGGTTATGATTCCGATCTCTACACCAAGATGGTTAGGTACCCACTTGAGGTGTTAGCCATCTTCGACATCGTTCTCATGGACATGGCCAGCCGCATCAACCCGCTATTTGAGAAGCACATCCAGGCTCGAATTTTCAATCTCAAAACCTCCACATCCATGAGGAGTCTCAACCCATCTGACATTGAGAAGATGGTATCAGTAAAAGGAATGATAATTCGCAGTAGCTCTATAATACCCGAAATCAGGGAAGCTATATTCCGATGCCTCGTATGCGGTTACTTCTCTGATCCCATTGTTGTAGATCGAGGCCGAATCACTGAACCTACGAGATGTGGGAGACAAGAGTGTCTCGCCATGAATTCCATGACATTAGTTCACAACCGATGCAGATTTGCCGATAAGCAGATCGTGAGGCTCCAGGAGACACCAGATGAGATTCCTGAAGGTGGGACACCCCACACAGTGAGCTTGTTAATGCACGACAAGCTTGTTGACACGGGAAAGCCAGGTGATAGAGTCGAGGTCACTGGGATTTACAGGGCAATGAGTGTTAGAGTAGGACCAACACAGAGAACCGTGAAATCTTTGTTCAAGACTTACATAGACTGTCTTCATTTAAAGAAGACCGACAAGTCGAGAATGCAGGCTGAGGATCCTATGGAATTTGTTAGTGGCTCTGGCGACGGTGATGAAGAAGTCTCACTTGGGTATCAGGAAAAGGTTGAGCAACTGAAAGAGCTAGCCAAACTGCCTGATATTTACGAGAGGCTAACCAGGTCCCTGGCACCGAACATATGGGAGCTGGACGATGTAAAGAAAGGCCTTCTTTGCCAGCTGTTTGGGGGAAATGCTTTGAAGCTGCCATCGGGGGCTAGCTTTCGTGGTGACATCAATATTCTGCTTGTTGGTGATCCTGGGACCAGCAAATCCCAGCTGCTACAATACATTCACAAGCTCTCGCCTCGTGGCATTTACACCAGTGGAAGAGGGAGTTCAGCTGTAGGTTTGACTGCCTATGTCACCAAGGACCCAGAAACGGGTGAAACGGTTCTAGAGAGTGGGGCCCTGGTCCTGAGTGATAGAGGCATCTGCTGCATTGACGAATTTGACAAAATGTCAGACAACGCAAGGAGTATGTTGCATGAGGTAATGGAACAACAAACTGTTTCAATAGCAAAGGCCGGGATCATTGCTTCACTTAATGCTAGGACTTCAGTGTTAGCTTGTGCAAATCCAAGTGGTTCTCGTTATAATCCGCGCTTATCTGTGATCGACAATATTCACCTTCCTCCTACATTACTGTCAAGGTTTGATCTGATATACTTAATTCTTGACAAGGCTGATGAACACACGGATAGGCGTCTTGCTAAGCATATCGTTGCATTGCACTTTGAGAATCCTGAGAGCATACAGCAGGATGTCTTAGATATTCCAACTTTAACGGCTTATCTGAGCTACGCCAGAAGGCACATTCGCCCACAATTATCAGATGAAGCTGCAGAAGAATTAACACGGGGATATGTCGAGATGAGGAGAAGAGGAAACTTCCCAGGAAGCAGCAAAAAGGTGATAACGGCAACACCCAGGCAAATTGAGAGTCTAATTCGTCTTAGCGAAGCCCTGGCGCGGATTCGTTTTTCAGAATGGGTTGAAAAGCGTGATGTGGCAGAGGCATTTAGGCTCCTAGAAGTTGCCCTCCAACAGTCTGCAACGGATCACTCCACAGGGACCATTGACATGGATCTCATTACCACCGGAGTTTCTGCAAGTGAAAGGATGAGACGGGAAAATCTGTTGTCGGCGACTCGCAACATAATAATGGAAAAGATGCAACTCGGGGGACCCTCAACTCGTTTATTGGAGTTACTGGAAGAACTGAAGAAGCAAAGCTTGGGGGAAATTCACCTTAGCGATCTAAGGAATGCTCTTGCGACCCTTGCAACCGAGGGATTTGTCGTTGTTCATGGTGAGAGTGTAAAGAGGGTATGA 2502 0.4928 MASDSSPIHQNGGPSSPDDSYSSPIGNTNSSPGDAHRRRSRRRSSTASGYATPPPQHSRFAAADATPTPSSTQSRRGRKRASRGTPIATPTSTDEAPPSSEAGEGDEADEAPPMFVWGTNISVQDVNAAILRFLRHFREQPSHTEGKYMRAIHHILEVEGDSLDVDAQDVFGYDSDLYTKMVRYPLEVLAIFDIVLMDMASRINPLFEKHIQARIFNLKTSTSMRSLNPSDIEKMVSVKGMIIRSSSIIPEIREAIFRCLVCGYFSDPIVVDRGRITEPTRCGRQECLAMNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHLKKTDKSRMQAEDPMEFVSGSGDGDEEVSLGYQEKVEQLKELAKLPDIYERLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEHTDRRLAKHIVALHFENPESIQQDVLDIPTLTAYLSYARRHIRPQLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVAEAFRLLEVALQQSATDHSTGTIDMDLITTGVSASERMRRENLLSATRNIIMEKMQLGGPSTRLLELLEELKKQSLGEIHLSDLRNALATLATEGFVVVHGESVKRV* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02029 833 SUPERFAMILY Nucleic acid-binding proteins 132 374 IPR012340 -
Eupl03g02029 833 ProSiteProfiles MCM family domain profile. 424 630 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 FunFam DNA helicase 406 743 - -
Eupl03g02029 833 Gene3D - 224 363 IPR012340 -
Eupl03g02029 833 MobiDBLite consensus disorder prediction 1 113 - -
Eupl03g02029 833 Pfam MCM AAA-lid domain 650 736 IPR041562 -
Eupl03g02029 833 Gene3D - 120 218 - -
Eupl03g02029 833 Pfam MCM P-loop domain 412 634 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 SMART mcm 220 738 IPR031327 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 SMART AAA_5 466 616 IPR003593 GO:0016887
Eupl03g02029 833 MobiDBLite consensus disorder prediction 1 33 - -
Eupl03g02029 833 FunFam DNA helicase 251 303 - -
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein family signature 553 566 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein family signature 465 480 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein family signature 577 589 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein family signature 525 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein family signature 604 612 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 CDD MCM4 427 736 - -
Eupl03g02029 833 Gene3D - 408 742 IPR027417 -
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 297 309 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 440 451 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 586 603 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 246 259 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Eupl03g02029 833 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 738 747 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Eupl03g02029 833 Pfam MCM OB domain 224 353 IPR033762 -
Eupl03g02029 833 Gene3D - 743 830 IPR036388 -
Eupl03g02029 833 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 127 788 IPR031327 GO:0003677|GO:0005524|GO:0032508
Eupl03g02029 833 ProSitePatterns MCM family signature. 533 541 IPR018525 GO:0003677|GO:0005524|GO:0006260
Eupl03g02029 833 Gene3D - 251 303 - -
Eupl03g02029 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 751 IPR027417 -
Eupl03g02029 833 Pfam MCM N-terminal domain 129 221 IPR027925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02029 Eupl-Chr3 49451291 49456057 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02029 1 833 Core DNA Replication Machinery Family AT2G16440 74.794 0.0 1265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02029 K02212 - nnu:104605513 1478.77