Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl03g02012 | ATGGCGAAAGCCCGACCACCAAGAAGAACCTTAGACACCTACACCATCAAAGGCACCAACAAAACTATCAAAGCTGGGGACTGCGTTTTGATGAGACCGGCGGACTCATCCAAACCCCCTTACGTAGCGAAAGTGGAGAAGATCGAATCGGACGCTAGAGGCCACGTGAAGGTACAGGTGCGGTGGTATTATCGGCCGGAGGAATCGATCGGAGGGCGGAGGCAGTTCCACGGGGCCAAAGAGGTGTTCCTGTCCGACCACTATGACGTACAGAGCGCAGATACCATCGAGGGCAAGTGTACCGTACACAGCTTTAAAAGCTACACCAAGCTCGATGCCGTTGGTAACGATGACTTTTTCTGTCGATTCGAGTATAATTCCGCAACCGGAGCGTTTAATCCCGACAGAGTTGCTGTATACTGCAAGTGTGAGATGCCTTACAACCCGGACGACTTAATGGTTCAGTGCGAGGGCTGCACTGATTGGTTTCATCCTCCTTGTATAGATATGAGCGTAGAGGAAGCCAAAAAAATAGAGCATTTCTTCTGTCAAAGTTGTGCCTCTCAAGATGAAAAGAAGTCGCGCAATCACACTGCTTCAAGAAACTCAGAGACAAAGGTATTTGTTAGGTATTCTGGCACTCGAAGGGTATAA | 654 | 0.4924 | MAKARPPRRTLDTYTIKGTNKTIKAGDCVLMRPADSSKPPYVAKVEKIESDARGHVKVQVRWYYRPEESIGGRRQFHGAKEVFLSDHYDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPPCIDMSVEEAKKIEHFFCQSCASQDEKKSRNHTASRNSETKVFVRYSGTRRV* | 218 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl03g02012 | 217 | ProSitePatterns | Zinc finger PHD-type signature. | 141 | 186 | IPR019786 | - | |
Eupl03g02012 | 217 | FunFam | Chromatin remodeling protein EBS | 1 | 132 | - | - | |
Eupl03g02012 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 205 | IPR013083 | - | |
Eupl03g02012 | 217 | ProSiteProfiles | Zinc finger PHD-type profile. | 138 | 189 | IPR019787 | - | |
Eupl03g02012 | 217 | Pfam | PHD-finger | 140 | 188 | IPR019787 | - | |
Eupl03g02012 | 217 | Gene3D | - | 4 | 132 | IPR043151 | - | |
Eupl03g02012 | 217 | SMART | PHD_3 | 140 | 187 | IPR001965 | - | |
Eupl03g02012 | 217 | SMART | BAH_4 | 21 | 136 | IPR001025 | GO:0003682 | |
Eupl03g02012 | 217 | ProSiteProfiles | BAH domain profile. | 21 | 136 | IPR001025 | GO:0003682 | |
Eupl03g02012 | 217 | Pfam | BAH domain | 22 | 135 | IPR001025 | GO:0003682 | |
Eupl03g02012 | 217 | PANTHER | OS08G0421900 PROTEIN | 4 | 204 | - | - | |
Eupl03g02012 | 217 | SUPERFAMILY | FYVE/PHD zinc finger | 130 | 193 | IPR011011 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl03g02012 | Eupl-Chr3 | 49134937 | 49146534 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl03g02012 | 41 | 138 | Core DNA Replication Machinery Family | AT4G14700 | 29.293 | 3.19e-09 | 54.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Eupl03g02012 | BAH | 2.6e-24 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl03g02012 | K25868 | - | ming:122061584 | 397.127 |