Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02012 ATGGCGAAAGCCCGACCACCAAGAAGAACCTTAGACACCTACACCATCAAAGGCACCAACAAAACTATCAAAGCTGGGGACTGCGTTTTGATGAGACCGGCGGACTCATCCAAACCCCCTTACGTAGCGAAAGTGGAGAAGATCGAATCGGACGCTAGAGGCCACGTGAAGGTACAGGTGCGGTGGTATTATCGGCCGGAGGAATCGATCGGAGGGCGGAGGCAGTTCCACGGGGCCAAAGAGGTGTTCCTGTCCGACCACTATGACGTACAGAGCGCAGATACCATCGAGGGCAAGTGTACCGTACACAGCTTTAAAAGCTACACCAAGCTCGATGCCGTTGGTAACGATGACTTTTTCTGTCGATTCGAGTATAATTCCGCAACCGGAGCGTTTAATCCCGACAGAGTTGCTGTATACTGCAAGTGTGAGATGCCTTACAACCCGGACGACTTAATGGTTCAGTGCGAGGGCTGCACTGATTGGTTTCATCCTCCTTGTATAGATATGAGCGTAGAGGAAGCCAAAAAAATAGAGCATTTCTTCTGTCAAAGTTGTGCCTCTCAAGATGAAAAGAAGTCGCGCAATCACACTGCTTCAAGAAACTCAGAGACAAAGGTATTTGTTAGGTATTCTGGCACTCGAAGGGTATAA 654 0.4924 MAKARPPRRTLDTYTIKGTNKTIKAGDCVLMRPADSSKPPYVAKVEKIESDARGHVKVQVRWYYRPEESIGGRRQFHGAKEVFLSDHYDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPPCIDMSVEEAKKIEHFFCQSCASQDEKKSRNHTASRNSETKVFVRYSGTRRV* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02012 217 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Eupl03g02012 217 FunFam Chromatin remodeling protein EBS 1 132 - -
Eupl03g02012 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 205 IPR013083 -
Eupl03g02012 217 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Eupl03g02012 217 Pfam PHD-finger 140 188 IPR019787 -
Eupl03g02012 217 Gene3D - 4 132 IPR043151 -
Eupl03g02012 217 SMART PHD_3 140 187 IPR001965 -
Eupl03g02012 217 SMART BAH_4 21 136 IPR001025 GO:0003682
Eupl03g02012 217 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Eupl03g02012 217 Pfam BAH domain 22 135 IPR001025 GO:0003682
Eupl03g02012 217 PANTHER OS08G0421900 PROTEIN 4 204 - -
Eupl03g02012 217 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02012 Eupl-Chr3 49134937 49146534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02012 41 138 Core DNA Replication Machinery Family AT4G14700 29.293 3.19e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl03g02012 BAH 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02012 K25868 - ming:122061584 397.127