Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02004 ATGGGAAAGAAGAAAAATATGAGGGAGGACGGAGAAGGGTTGAAGAAAGGAGACAGCGATCACTCCCGGTCGACGGTATTCGTCAGCAACTTGGCCTATTCATTTACGAACACGGAGTTGGAAGAAACATTTAGCGAGGTGGGTCCCATAAGACGATGCTTCATGGTTACTCAAAAGGGATCAGATGTACATCGTGGCTTTGGGTTTGTCCAATTTGCTGTTACAGAAGATGCCGATCGTGCCATTGAGCTGAAAAATGGTGCATCTATTGGTGGGAGGAAAATTGGAGTTAAACATGCGATGCACCGTCTTCCCCTTGACCAACGCCGGTCAAAGGTCATTCAAGATGACATCAAGGCAAAGGATGATAAGGAAAACCTTTCCCATGGGGTTTTCAAACATGAACAAGCTCCAAACACGCGTGAAATAGGGGAGTCAAAGGGAACCAAGAAAGCAGTGGCACTTCACAGTGATCTTGCTGATAAAGGGGATAGTTCAGAAAAGCAGAGTGCTATTACAGAAGATGCTGATCGTGCCATTGAGCTGAAAAATGGTGCATCTATGGGTGGGAGGAAAATTGGAGTTAAACATGCGACGCACTGTCTTCCCCTTGACCAACGCCGGTCAAAGTCCATTCAAGTCCGTGCAGATGATATCAAGGCAAAGGATGATAAGGAAAACCTTTCCCATGGGGTTTTCAAACGTGAACAAGCTCCAAACACGCGTGAAATAGGGGAGTCAAAGGGAACCAAGAAGGCTGTGGCACTTCACAGTGATCTTGCTGATAAAGGGGATAGTTCAGAAAAGCAGAGGATTGCTAGAACAGTCATATTTGGTGGACTTCTTAGTGCTGATATGGCTGAGGAAGTTTTCCATCGTGCCAAAGAGGTTGGCACTGTATGCTCTGTAACTTATCCTCTTCGGAAAAAAGAGCTTGAACTCCATGGGCTTGCTCGAGATGGATGCAAAATGGATGCTTCAGCTGTACTTTATGCGAGTGTTAAGGCAGCACGTGCTTCTGTTGCTATGTTGCACCAACAGGCAATAAAAGATGGATGTGTATGGGCACGTCAGTTGGGTGGGGAGGGTTCCAAGACGCAGAAGTGGAAACTTATAGTTAGAAATCTTCCTTTCAAGGCTAAAGTCAATGAGATTAGAGATCTGTTTTCATCAGCAGGTTTTGTGTGGGACGTATTTATTCCACAAAAGTTCGAGACAGGATTATCTAAGGGCTTTGCATTTCTTACCTTCACGTGCAAGCAAGATGCAGAAAAAGCCATCCAGAAGGTTAATGGGCAAATATTTGGTAAAAGACCCATTGCTGTTGATTGGGCTGTTCCAAAGAAAATATATACCACTGGTGCTAATGACGTCGATGCAACAAAAGATGGGCAACAAAATGATATATATGACGAGAGTGACACCAGTGGTGATGACATGGAGGATGATGTTACTGATGGTGATAGGAAACCCCAAAACCCTCATGCAGGAGAAAGTGTTCTAGGAGACTTAAATGCCACAGAGAATGAAGTTCCTCTTAAAGAGGTGGATTTTGATGAGGAAGCAGACATTGCGAGGAAAGTTCTTAAGAACTTGATCACATCCTCTGCAAAAGAAACCTTGCCTTCTGTCGGTGATGATTCCACGTTACCTCAAAGTAACGAGTTATCTGTTAAGCCTGGAAAAAATTCAGGTACAGTGAAACCTGAAAAGTCTGCCAAAATTGAACTGACGAGTCGTCAGCAGATTGAGGCTGAGGATGATCTGCAGAAAACAATTTTCATAAGCAACCTTCCATTTGATATTGATATTGAAGAGGTGAAACAACGGTTCTCTGCCTTTGGGGAAGTACAATCCTTTGTCCCAGTTCTTCATAAAATCACCAAGCGACCAAGAGGAACTGGGTTTCTCAAGTTTAGTACAGCATCTGCAACAGATGCTGCAGTTTCAGCAGCGAATGTTACATCCAGTTTAGGGATTTTTCTGAAAGGTAGACAAGTGACTGTTTTGAAGGCTTTGGACAAGAAATCAGCTCACTGTAAGGAGCTGGAGAAGACGAAGAATGAGGGTCATGACCACCGCAACCTTTATCTTGCAAAGGAAGGTGTCATTCTTGAGGGGTCGCCAGCGGCCGAAGGTGTTTCAGCAAGTGATATGTTGAAGCGCCAAATGTTGGAAAAGAAAAAGAATTCTAAGCTTCAATCTCCGAATTTTCATGTTTCAAGAACTAGACTCATTGTATACAATTTGCCGAAGGCAATGACAGAAAAGGAACTTAAAAAGCTCTGTATAGATGCAGTTCTTTCCCGAGCTAGCAAACAAAATCCTGTGATTCGACAGATAAAGTTCTTGAAGGATTCAAAGAAAGGAAAGGTTGTTGCAAAGAACTATTCGCGTGGAGTAGCTTTTGTCGAGTTCACTGAACATCAGCATGCACTTGTGGCCCTGAGAGTTCTTAATAATAATCCTGAAACTTTTGATCCTGAGTACCGCCCGATCGTTGAGTTTGCTCTTGATAATGTCCAAACGTTAAAGTTGCGGAAATTTAAGCTACAGTCTCAGCAAGCCAACCGTGCCAATGCAGATGTGCAGCAAAGTACTACATCACAAATGGAAGATGCCCCTCCAAACGAGAGGGATGAAAAGAAATCGAAAAAGCGCAAATTCAGAGGCGATAACAGGTCATCTGAGGCATCGGAACCTAGTAAAGGAGATGAAGGGGAAGATGGGGCACTAAAGGGTGCCACTGACAAAGAAGACCTTGCAACCAAGAAGCTGAAGGGTGCTCCAGGAAGAGAAAGGAAGGCCAAGCTTGCTTCCAAAACTAAATCTGAGGGGTCAACTCTGAGGCTAAACAAGCACCAAGAAGGGACAGGCTCTCATGTTGGAAAAACATTTGACGGTGCAAATAATGACGTTAATACCCGTGAATTAAAATCTAAGGTGGGTCCACAAAAGAGGAAGCTGCAGGATGGTGTTGATTCAGAACAACAAAAGGACGGGAAATATTTGAAGAAAAAGAAAAAGACCAAGAATGCAGGAGCTTCAGGGAAAGAAACGGTGGATAAACTGGACATGCTGATTGAACAATATCGATCCAAGTTTTCACAGAAGAGTTATAATAAGCCCGATGGTGAAAAACAAGGTTCTAGACAACTCAGAAGATGGTTCCAGACGTAG 3180 0.4365 MGKKKNMREDGEGLKKGDSDHSRSTVFVSNLAYSFTNTELEETFSEVGPIRRCFMVTQKGSDVHRGFGFVQFAVTEDADRAIELKNGASIGGRKIGVKHAMHRLPLDQRRSKVIQDDIKAKDDKENLSHGVFKHEQAPNTREIGESKGTKKAVALHSDLADKGDSSEKQSAITEDADRAIELKNGASMGGRKIGVKHATHCLPLDQRRSKSIQVRADDIKAKDDKENLSHGVFKREQAPNTREIGESKGTKKAVALHSDLADKGDSSEKQRIARTVIFGGLLSADMAEEVFHRAKEVGTVCSVTYPLRKKELELHGLARDGCKMDASAVLYASVKAARASVAMLHQQAIKDGCVWARQLGGEGSKTQKWKLIVRNLPFKAKVNEIRDLFSSAGFVWDVFIPQKFETGLSKGFAFLTFTCKQDAEKAIQKVNGQIFGKRPIAVDWAVPKKIYTTGANDVDATKDGQQNDIYDESDTSGDDMEDDVTDGDRKPQNPHAGESVLGDLNATENEVPLKEVDFDEEADIARKVLKNLITSSAKETLPSVGDDSTLPQSNELSVKPGKNSGTVKPEKSAKIELTSRQQIEAEDDLQKTIFISNLPFDIDIEEVKQRFSAFGEVQSFVPVLHKITKRPRGTGFLKFSTASATDAAVSAANVTSSLGIFLKGRQVTVLKALDKKSAHCKELEKTKNEGHDHRNLYLAKEGVILEGSPAAEGVSASDMLKRQMLEKKKNSKLQSPNFHVSRTRLIVYNLPKAMTEKELKKLCIDAVLSRASKQNPVIRQIKFLKDSKKGKVVAKNYSRGVAFVEFTEHQHALVALRVLNNNPETFDPEYRPIVEFALDNVQTLKLRKFKLQSQQANRANADVQQSTTSQMEDAPPNERDEKKSKKRKFRGDNRSSEASEPSKGDEGEDGALKGATDKEDLATKKLKGAPGRERKAKLASKTKSEGSTLRLNKHQEGTGSHVGKTFDGANNDVNTRELKSKVGPQKRKLQDGVDSEQQKDGKYLKKKKKTKNAGASGKETVDKLDMLIEQYRSKFSQKSYNKPDGEKQGSRQLRRWFQT* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02004 1059 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 591 674 IPR000504 GO:0003723
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 540 561 - -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 456 505 - -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 942 978 - -
Eupl03g02004 1059 PANTHER RNA-BINDING MOTIF PROTEIN 14B 169 1058 - -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 874 941 - -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 540 572 - -
Eupl03g02004 1059 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 743 856 IPR000504 GO:0003723
Eupl03g02004 1059 CDD RRM4_RBM28_like 743 840 - -
Eupl03g02004 1059 SUPERFAMILY RNA-binding domain, RBD 591 821 IPR035979 GO:0003676
Eupl03g02004 1059 SUPERFAMILY RNA-binding domain, RBD 20 109 IPR035979 GO:0003676
Eupl03g02004 1059 CDD RRM1_RBM28_like 25 103 - -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 979 1003 - -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 1034 1059 - -
Eupl03g02004 1059 SMART rrm1_1 592 670 IPR000504 GO:0003723
Eupl03g02004 1059 SMART rrm1_1 370 443 IPR000504 GO:0003723
Eupl03g02004 1059 SMART rrm1_1 25 98 IPR000504 GO:0003723
Eupl03g02004 1059 SMART rrm1_1 744 835 IPR000504 GO:0003723
Eupl03g02004 1059 Gene3D - 578 681 IPR012677 -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 1 21 - -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 852 1021 - -
Eupl03g02004 1059 FunFam RNA-binding motif protein 28 742 837 - -
Eupl03g02004 1059 MobiDBLite consensus disorder prediction 852 873 - -
Eupl03g02004 1059 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Eupl03g02004 1059 Gene3D - 742 837 IPR012677 -
Eupl03g02004 1059 CDD RRM2_RBM28_like 370 446 - -
Eupl03g02004 1059 CDD RRM3_RBM28_like 591 672 - -
Eupl03g02004 1059 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 369 447 IPR000504 GO:0003723
Eupl03g02004 1059 SUPERFAMILY RNA-binding domain, RBD 364 450 IPR035979 GO:0003676
Eupl03g02004 1059 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 440 IPR000504 GO:0003723
Eupl03g02004 1059 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 593 653 IPR000504 GO:0003723
Eupl03g02004 1059 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 95 IPR000504 GO:0003723
Eupl03g02004 1059 Gene3D - 2 112 IPR012677 -
Eupl03g02004 1059 Gene3D - 356 483 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02004 Eupl-Chr3 49034073 49064376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02004 373 448 Eukaryotic Initiation Factors Gene Family AT5G06000 31.579 5.55e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02004 K14573 - cave:132187785 1124.77