Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01998 ATGGCTACTTATTACCCCAGTTCAAGCAACCAAAGAGATGTTATGCCAACCATCTATTTAAGGGACCCTGCGCCCTCTTCGTATCCTGAAGCACCAGTTCTTCCTGGTAACATGATGATGTATATGAATTACTCGTCTTCCTCCGGGTCCTACTCGGATACCTTGGCTGGAAATTCCCAGCCACAGCAAAACTGTGTCGAGCTCCCATCTGTTGGAGCATCAGAGTTGGCCTCATCACAGCAAGGAATCCTATCGAACCTCACCGGTTCCCATACTGGTGACCAATCTTATGGTGTGTGGAGGGATGGCAGAGTGGAGATGTTGTTCATGCAGCCAACGGGTGGCCATACGAGCATGCAATCTGTTGGCGGACATATAAATGGCGCAACAGATGATCTGGTCCGCAGTTCTGTTACTGAGGATCCCCAGATTGGTCTGCACTCACAGCTAGGAGTTCTACACAGTGGACAGAACTTGCAGGGACAGGGATTATCCCTCAGCCTCAGCACACGGATCCCATCCGCCATTCCTCTGCCTTCATTCCAGTACCGGCATCCCAATCCGGGCCTTTCTTCATTCTTGACTTCTCATCCGGCCATTTCAGGAGAAGGTGGCAGTGGAACTGGCTCATGCAGAGATGATGAGAGTTCTCAAAGCAAGCAACTGAGAAATGCTGAATACTTGCCACCTGGTTTTCCTGGGGGTAATCACGATGCAATAAAAATGGAGGCATTGAACAACCTTCAGTGCTCAGTTGGCCACAAACAGATGCATTCTGATCCTTCTCCATATGGTCTGCCCAGTCTTGCAAGCACCATTCCCAACTCCAAATACCTCAAGGCAGCACAGCAACTGCTTGACGAAGTCGTCAATGTCCGTAAGGCTCTGAAGCAGCACGAGTCTGACAAACAAGGCTTCCAAGGGTTTGGTTTAAAGGTCTCCAAAGAGACTGATGGAGGATTGAAGGATGGTGCTGCATTGCCTCCCTCAACAGGGATGTCTTCAAACGCTCAAGAGTCAACTACCAACTCTGCTGGCGAGCTCTCACCTGCTGAAAAACAGGATTTACAGAACAAGATGACAAAGCTTTTGTCCATGCTTGATGAGGTTGATAGAAGATACAAGCAGTACTACCATCAGATGCAGATTGTAGTGTCATCTTTTGATGTAATAGCAGGGTGTGGGGCTGCTAAACCATACACAGCACTTGCTCTCCAGACGATTTCACGCCACTTCCGCTGCTTACGAGATGCAATCAGTGGCCAGATTAAAGCAACCCGGAGAAGCCTCGGGGAGCAAGATACTGCAGGAAACAGCAAGGGGAGTGGAATATCTCGTCTCCGCTTTGTGGACCAGCAGCTCAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATGCAGCAACATGCTTGGAGGCCACAGAGGGGGCTGCCTGAAAGCTCCGTTTCAATCCTTAGGGCTTGGCTGTTTGAGCACTTCCTTCATCCTTACCCAAAGGATTCCGATAAAATAATGCTTGCAAGGCAGACGGGCTTGACCAGAAGTCAGGTTTCGAACTGGTTTATAAATGCACGGGTGCGTCTCTGGAAGCCGATGGTCGAGGAGATGTATAAAGAAGAGATCGGTGACCCCGAGATGGACTCAAATTCTTCATCTGACAACGCACCCAAAGCAGCAAGGGATGATATAAGGGTCTCTGAGGATGGGAGGGAGGAGTTGCAGCAAAATGTCAACTCTGCTACCACTGAGAGATGCCACCCTGGCCCATTCCAAGAATCAAAATCTGATCTCGTTCCCAATGTGGAAATGTCTGGGCCGACAGCAGGAACCAGCTTTCAGAACGGGGCTCATCGAGAAGATGACACGGACTTTGGGGGTATGAAATTAAGGGGGGACCAAAGACCCAATGCGAATGACTGTAGTCTTCTCCAGGACGCTTTCGTTCGGTCTGACAGGAGTGGTGGCGGGAGGTTTATGGATGCTGCCACTGCATACCAGATGGCAGAGTTAGGAAGGTTCGGGAGTGGCAGTGGGGTGTCGCTCACTTTGGGGTTGCAGCATTGTGACGGTGGTGGCCTACCCATGTCTGGCGGGACCCATCACAATTTCGTTACCATGGGAGGGGACGAGATGTACAATGCATCAACTTCTTCTGTGGGGCCTGACACGGCAGATTACGACTGTATGGATACAGGGAACCGACGGCACAGGTTCAGCTCCTCCCATCTGTTGCATGATTTTGTAGCCTAA 2250 0.5049 MATYYPSSSNQRDVMPTIYLRDPAPSSYPEAPVLPGNMMMYMNYSSSSGSYSDTLAGNSQPQQNCVELPSVGASELASSQQGILSNLTGSHTGDQSYGVWRDGRVEMLFMQPTGGHTSMQSVGGHINGATDDLVRSSVTEDPQIGLHSQLGVLHSGQNLQGQGLSLSLSTRIPSAIPLPSFQYRHPNPGLSSFLTSHPAISGEGGSGTGSCRDDESSQSKQLRNAEYLPPGFPGGNHDAIKMEALNNLQCSVGHKQMHSDPSPYGLPSLASTIPNSKYLKAAQQLLDEVVNVRKALKQHESDKQGFQGFGLKVSKETDGGLKDGAALPPSTGMSSNAQESTTNSAGELSPAEKQDLQNKMTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQIKATRRSLGEQDTAGNSKGSGISRLRFVDQQLRQQRALQQLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGDPEMDSNSSSDNAPKAARDDIRVSEDGREELQQNVNSATTERCHPGPFQESKSDLVPNVEMSGPTAGTSFQNGAHREDDTDFGGMKLRGDQRPNANDCSLLQDAFVRSDRSGGGRFMDAATAYQMAELGRFGSGSGVSLTLGLQHCDGGGLPMSGGTHHNFVTMGGDEMYNASTSSVGPDTADYDCMDTGNRRHRFSSSHLLHDFVA* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01998 749 Coils Coil 279 302 - -
Eupl03g01998 749 Pfam Homeobox KN domain 488 527 IPR008422 GO:0003677|GO:0006355
Eupl03g01998 749 MobiDBLite consensus disorder prediction 572 588 - -
Eupl03g01998 749 CDD homeodomain 471 532 IPR001356 GO:0003677
Eupl03g01998 749 MobiDBLite consensus disorder prediction 541 598 - -
Eupl03g01998 749 SMART HOX_1 471 535 IPR001356 GO:0003677
Eupl03g01998 749 SUPERFAMILY Homeodomain-like 472 538 IPR009057 -
Eupl03g01998 749 Gene3D - 466 544 - -
Eupl03g01998 749 FunFam BEL1-like homeodomain protein 4 474 536 - -
Eupl03g01998 749 MobiDBLite consensus disorder prediction 329 353 - -
Eupl03g01998 749 SMART prehox3 267 421 IPR006563 -
Eupl03g01998 749 MobiDBLite consensus disorder prediction 320 353 - -
Eupl03g01998 749 Coils Coil 353 373 - -
Eupl03g01998 749 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 150 552 - -
Eupl03g01998 749 Pfam Associated with HOX 273 420 IPR006563 -
Eupl03g01998 749 MobiDBLite consensus disorder prediction 557 571 - -
Eupl03g01998 749 ProSiteProfiles 'Homeobox' domain profile. 468 531 IPR001356 GO:0003677
Eupl03g01998 749 MobiDBLite consensus disorder prediction 194 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01998 Eupl-Chr3 48932166 48941497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01998 27 749 Homeobox Transcription Factor Family AT4G34610 40.680 1.99e-134 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Eupl03g01998 POX 3.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01998 - - ming:122091742 1065.45