Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01997 ATGTCTGAATCTCGGAATACCAACGATAGAGAACAAACTGAAGCAGCTCAGTTTTCAGGGCTTAATGCATCTGAGCATGATCTAACTGTGGCTGAAATATCCGTGCATCCGAGACATGTGAAGCAAATGAAGCCTCATCAACTCGAGGGCTTCAATTTCTTGTTAAGGAACTTAGTAACAGATAAACCAGGTGGTTGCATCCTGGCCCATGCTCCAGGATCTGGAAAAACTTTTATGATCATAAGTTTTATGCAGAGTTATCTAGCCAAGTATCCCAGTGCCAGACCATTGGTTGTACTACCAAAAGGCATCCTGGCTACATGGAGGAAAGAGTTCCAAATATGGCAAGTTGAAGACATTCCATTGTACAACCTCTACTCCGCCAAGGCAGAAAACCGGTCTCAGCAATTGGATGTGTTGAAAAACTGGCTAGAGCACAAAAGCATCCTTTTTTTAGGGTATAAGCAGTTCTCCAACATTGTTTGTGACAATACCAGCAAGACCTCCACTGTCTGCCGGGACATACTCCTGAAGGTTCCTACCATTCTTATTCTGGATGAAGGCCACACTCCTAGGAATGAAGACACAAACATACTATCCTCCCTTGCAAAGGTGCAAAGGCCTCGCAAAGTAGTACTATCAGGCACCTTATTCCAGAATCACGTCAAAGAAATATTCAATATATTGGACTTTGTCCGTCCGAAGTTTCTGAAGTTGGATACTTCCCGGGCTGTTGTCAGGCATGTCAGCAGCAGAGTGCAGATATCAGGTGGGAGGAGGCAGTTTAAAACCGGTGTATCCACACCGTTCTTTGACTTGGTTGAAGAGACACTACAGAATGATTTCAAAAGGAAAGTAACAGTCATACAAGACCTCCGTGAGATGACAAACAAGGTTCTCCATTAG 906 0.4393 MSESRNTNDREQTEAAQFSGLNASEHDLTVAEISVHPRHVKQMKPHQLEGFNFLLRNLVTDKPGGCILAHAPGSGKTFMIISFMQSYLAKYPSARPLVVLPKGILATWRKEFQIWQVEDIPLYNLYSAKAENRSQQLDVLKNWLEHKSILFLGYKQFSNIVCDNTSKTSTVCRDILLKVPTILILDEGHTPRNEDTNILSSLAKVQRPRKVVLSGTLFQNHVKEIFNILDFVRPKFLKLDTSRAVVRHVSSRVQISGGRRQFKTGVSTPFFDLVEETLQNDFKRKVTVIQDLREMTNKVLH* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01997 301 Pfam SNF2-related domain 63 286 IPR000330 GO:0005524|GO:0140658
Eupl03g01997 301 Gene3D - 9 263 IPR038718 -
Eupl03g01997 301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 270 IPR027417 -
Eupl03g01997 301 SMART ultradead3 39 248 IPR014001 -
Eupl03g01997 301 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 235 IPR014001 -
Eupl03g01997 301 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 5 301 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01997 Eupl-Chr3 48928857 48929762 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl03g01997 SNF2_N 2.5e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01997 K10875 - ming:122074038 464.922