Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01967 ATGGAGTCTGCAAATCTCCGTCACCAATATCAGCTCCAAGAACAGTTTGTTGGATCTTCTTCTTTACCTGGTGTTGGAAGCAACAATGCTTGGAACCCAAATCTCATTTTGAATGGAGGTCTAAATGTCTCAAACTCGAGGGATTTAAGGCAAAACGGGGATGACATTGTAGTCCCTCCTCTCAACACTTCCATGATTCAAGACTTGGGTATCAATTGGGTTAGTAATACAGCTAACTTCACCAATCATTCAGCCCATGAACTACAACTTGCAAAAATCAAGGAGTTATCAGATTATCCCTGCCCTAAATTTTTTGGTACATTTAACGGCGCACTGTCTAATCTACAAGAATTTCATTTACCTTCCACAAGCTACATCAAACATGAGCAACAAGATTTAGTACATGATTTAAGTGAGAAGCTCTTGCTCAAAACCCTATCTTCTGGTTGGCAATTCAATGGGCTTCAACTTTCAGCTGGAGATTACTCCAACAGTTTTGGAGGTGTAGCTACATCTAGCAGAGGGAACTTCAGCCAGATCTTTCCAACTACTAATATTTCGAACCTGAATCCGTCCGCTTCTTTGTCGATATCGAGTTCCTTAGGCATGAACTTGCATGCTTTGGATCTTTTAAACTCTACAAAATTTGGTGGGTGTTTTAGCCAGCCTTCAAATGATAATCTTGGCCTATATAAGGAGAATCGATGTTTTGGTCTTGATCATCTGCAAGAATCAAGTCCCTGCTGGACAACAAGCAGCACCAATAAAATATCTTCCTACATGAATGGAGTTACACAAACAAAGAGATCTAGCAGTACTTTAGAGCCAAAAGCATCTCATACAGCACCCAAGAAGCCCCGACTCGAGTCGCGCTCGTCATTTCCACCCTTTAAGGTCAGAAAAGAGAAATTAGGTGACAGAATTGCAGCTCTCCAACAATTGGTGGCTCCTTTTGGCAAGACTGATACAGCCTCCGTACTAAATGAAGCCATTGGGTACATTAAATTCCTCCAAGATCAGGTCCAGACACTAAGCTTGCCTTACATGAAGTCATCATGCAACAATACTCAGAGAACAATTCAAGGGGGTTCAAGTGAGGAGGAGGGAGAAGAAGAAGAAGAAGCGAAGCCAGATCTCAGGAGTAGGGGGCTATGCCTTGTGCCGTTGTCATGCACGTCGTACGTTACTAACGACAGCTTATGCGTTTGGCCGCTCCCTAACTTTGGTGGAGGAACTTGA 1239 0.4286 MESANLRHQYQLQEQFVGSSSLPGVGSNNAWNPNLILNGGLNVSNSRDLRQNGDDIVVPPLNTSMIQDLGINWVSNTANFTNHSAHELQLAKIKELSDYPCPKFFGTFNGALSNLQEFHLPSTSYIKHEQQDLVHDLSEKLLLKTLSSGWQFNGLQLSAGDYSNSFGGVATSSRGNFSQIFPTTNISNLNPSASLSISSSLGMNLHALDLLNSTKFGGCFSQPSNDNLGLYKENRCFGLDHLQESSPCWTTSSTNKISSYMNGVTQTKRSSSTLEPKASHTAPKKPRLESRSSFPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLNEAIGYIKFLQDQVQTLSLPYMKSSCNNTQRTIQGGSSEEEGEEEEEAKPDLRSRGLCLVPLSCTSYVTNDSLCVWPLPNFGGGT* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01967 412 FunFam Transcription factor bHLH123 family 298 360 - -
Eupl03g01967 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 352 IPR036638 GO:0046983
Eupl03g01967 412 SMART finulus 299 343 IPR011598 GO:0046983
Eupl03g01967 412 Gene3D - 298 359 IPR036638 GO:0046983
Eupl03g01967 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Eupl03g01967 412 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 152 394 - -
Eupl03g01967 412 MobiDBLite consensus disorder prediction 263 294 - -
Eupl03g01967 412 MobiDBLite consensus disorder prediction 263 278 - -
Eupl03g01967 412 MobiDBLite consensus disorder prediction 355 377 - -
Eupl03g01967 412 CDD bHLH_AtbHLH_like 295 345 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01967 Eupl-Chr3 48496327 48502928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01967 62 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 41.944 2.48e-70 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01967 - - nnu:104595628 456.832