Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01937 ATGCTTGCGATGGAGAATTCGTCGAGATACAATAGAGCTTCTCACTCCAATTCCTCATTCAAACAGAGGCGAAGCGGTTATGAACCTTCGGATACAGAAACTGAATGGCTAGATAGCCCATGGAATGACCTGAAGAATGATCGTCATCCAAGGGATGGAGCTTTAGTTGCAGACCGGCCGAAAACTCCAGCGAGATATACCAGTCCTCTGAGTCGTAACCAGAGGTATTCTTCTTTTAATCCTGATCTCTCTTATCCTGTTAGAGCGTCAAAGACCAGCCCCATTCGAAGAAAGAATAGTAAATCTCCATTTAAACCACGCAGAGATGATGGTAGTCTTGTTTCCCCTAAATCAGGTGGTTCGGATCTGCGAAAAAATATCAGTCCTTTTTCAAAATCTGAGCGTCGGAAACATATTTCTCCATATAAAACTATGAGAGAGGAACCGGACGTGGATAGAAAGCAGAATCATAGATCGCCTCATAAACATCTTGATTCAGAGGAAAATGGAGCTCATTCACAATTTCAAGAACCTACTAGAGTGAGTGAGAGATCAAATCACAGCCTCAGATCACTCTCTGCTCCCAAACCAAGAGCAAGGGAGAAGGAGCAACAGATCAACCTGGGTCCCATGGAGCGGAGAGGAGGCAGGAGCCCCTCACCATTGTCAAGAATCCGGAAACAGAGGGAAACCTTCTACGCGCAAGCTCCTTCAGCAAGTGAAATCAATGAAATTGTTGCTAATGTGAAGTTTTCAAAAGGTCCCATTTCCGATGCTCAGGTGGAAAGCACAGAGTCGATTTCGCAAGGTAATATCTTTTTTTCTCGTGACTACGCAGCCTTGGCCATGCAGAAGAATGTTGTGGCAAAGAACAGTGGTTTTGCAAGCAGCTTTCCTGTAAAGCCTAAGGTAGTTTCTGAAAAAGATACTGCTTCTCATCAACGAAGTAGAGTAAATGCTAGTTTTGATCAGAATACCCATGTGGTTTCATCCAGTACTGTTGCATCGCGAACAAATACAACCTCCCGCTCTGCTGTAAGCAGGCAAAGTAGTAGTAAAAGTAGCATTGAGAGTAGTAAGATGAGTGATGGTGGTACACGGTCAAGTGAGAATTCCAGGAAATTCGCAGCAAATAGGCAGAAGAACCAAACAGATTCATGGTTTGGTTGTGTGAGGAAGGGACCTTGCAGGACCTCGAAATCACCCGAAACTAGGGAGTTTGATGAAACTTCATTTATCGAAAAGGCATTTGTGGTTGAAAAACTGAGACAATTCTGGGCTGATAAGCATCAACCTGGTTCATTGAATGGATTCACTTGCCACAAACAACAAGCACAACTTCTCAAGCAACTGATATCCCACAACAGCTGTCCGCATGTTTTGTTCAAGGGACCTTCGGGTTCAGGAAAGAAAGCACTATCCATGGCTTTACTGCGTGAAATCTATGGCGACCCAGCTTGGAATATATCTCATGATTTAAGGTGCTTCCCTGTTCAGGAAAACATGCCAATGCAAGTAGTTGTTCCAGTAACTTCCAGCCCTCATCATGTGGAACTTAATCTAAAGTCAGAATCAAAGAATGCTAGATATGCACTAATGACTCTAGTCAAGGAAATAATCAGCAATCATGCAATTACTCCTGAAGTCAGCAATGCAAGTTTCGGGGCAGATTACAAAGTGATAGTTCTCTATAAGGTTGACAAACTAGCAGAGAACATTCAGCACTTGATAAAATGGATAATGGACTGTTATACGGATGCATGCAAGATCATACTCTGCTGTGAAGATGATGTGGACATCCTTGATTCAATCAAAAGCCGCTGCAAAATTATCACAGTTGATGCTCCTGTTACTCATGAAATCATGGAGGTTCTTGTTCAGATAGCGAGGAAGGAAAACTTTGATCTTTCCATGAGCTTTGCTGCTAAGGTTGCAACCAAATCAAAGCAGAACTTGAGGAAAGCAATCATGGCACTTGAAGCATGTAAAGCACACAACTATCCTTTTGTTAATGAACAACCAATTCCGCTAGGCTGGGAAGAGGTCCTGGTGGAACTTGCTGCTGAGATTCTAGCCGATCCATCAACCAAAAGATTATTTTTTATACGGGGGAAGATTCAGAAACTGCTGGTGGATTTTGTTCACCCCAAACTGATTCTCCAGAAGCTCGTGGAACAGTTTCTTATGGGAGTCGAGGCTAGTTTAAAAAGGGAACTTTATTACTGGCATGCTTATTACGATAAGAGACTCCCAACTGGAACAAGTGCGCTACTGAAACTGGAAGAATTCGTGGCGAAGTTCATGAGTATCTACAGAAAAAGCTCAGTGGCGGTCCATATCAATAGATGA 2349 0.43 MLAMENSSRYNRASHSNSSFKQRRSGYEPSDTETEWLDSPWNDLKNDRHPRDGALVADRPKTPARYTSPLSRNQRYSSFNPDLSYPVRASKTSPIRRKNSKSPFKPRRDDGSLVSPKSGGSDLRKNISPFSKSERRKHISPYKTMREEPDVDRKQNHRSPHKHLDSEENGAHSQFQEPTRVSERSNHSLRSLSAPKPRAREKEQQINLGPMERRGGRSPSPLSRIRKQRETFYAQAPSASEINEIVANVKFSKGPISDAQVESTESISQGNIFFSRDYAALAMQKNVVAKNSGFASSFPVKPKVVSEKDTASHQRSRVNASFDQNTHVVSSSTVASRTNTTSRSAVSRQSSSKSSIESSKMSDGGTRSSENSRKFAANRQKNQTDSWFGCVRKGPCRTSKSPETREFDETSFIEKAFVVEKLRQFWADKHQPGSLNGFTCHKQQAQLLKQLISHNSCPHVLFKGPSGSGKKALSMALLREIYGDPAWNISHDLRCFPVQENMPMQVVVPVTSSPHHVELNLKSESKNARYALMTLVKEIISNHAITPEVSNASFGADYKVIVLYKVDKLAENIQHLIKWIMDCYTDACKIILCCEDDVDILDSIKSRCKIITVDAPVTHEIMEVLVQIARKENFDLSMSFAAKVATKSKQNLRKAIMALEACKAHNYPFVNEQPIPLGWEEVLVELAAEILADPSTKRLFFIRGKIQKLLVDFVHPKLILQKLVEQFLMGVEASLKRELYYWHAYYDKRLPTGTSALLKLEEFVAKFMSIYRKSSVAVHINR* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01937 782 FunFam Replication factor C subunit 3 678 771 - -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 194 208 - -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 128 170 - -
Eupl03g01937 782 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 426 760 - -
Eupl03g01937 782 Pfam DNA polymerase III, delta subunit 441 613 - -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 66 87 - -
Eupl03g01937 782 SUPERFAMILY post-AAA+ oligomerization domain-like 677 771 IPR008921 GO:0003677|GO:0006260
Eupl03g01937 782 Gene3D - 423 616 IPR027417 -
Eupl03g01937 782 Gene3D - 618 674 - -
Eupl03g01937 782 Gene3D - 678 771 - -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 1 223 - -
Eupl03g01937 782 FunFam Replication factor C subunit 3 424 616 - -
Eupl03g01937 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 664 IPR027417 -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 298 381 - -
Eupl03g01937 782 FunFam replication factor C subunit 3 617 675 - -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 171 192 - -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 1 25 - -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 315 381 - -
Eupl03g01937 782 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01937 Eupl-Chr3 48013359 48021836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01937 425 772 Core DNA Replication Machinery Family AT5G27740 40.571 1.17e-88 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01937 K10756 - msin:131237953 942.569