Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01927 ATGAATGATCTTATGACGAAATCGTTTCTCAGTTACGTTGAATTGAAGAAACAAGCCCGGAAAGACATTCAAGCCGGACCCGACATCGAGATGGGGCGACTCGGCCCCACCGATGAAGAGAGCCTCGGCCAATTTTTTCAAGAAGTTGGCGCGATCAAGAATGAGATGGAAGAGATCACCAATCTCCTTCTCGATCTTCAAGACTTAAACGAAGAGACGAAATCGACTCACAGCGCTAAAGTCCTACGTGGGCTTAGAGACAGGATGGATTCAGACATGGTTACTGTCCTTCGCAAGGCCAAAATCATCAAAACGAGATTGGAAGCTCTCGACCGATCCAATGTAGCCAACCGTAGCGTCTCAGCAGCATACAGAGAAGGAAGCCCGGTCGATAGGACGAGGATCTCAGTAACGAACGGTCTGAGAATCAAGTTGAGGGATATCATGAATGATTTTCAGTCGTTGAGAGAACGGATCATCTCAGATCACAAAGAAGGTTTGAAGAGAAGGTACTTCAATGTCACTGGTGAAGAACCGAGTGAGGAGGTGATCAATAAGATGGTTTCGACAGGTGGGCAAGTTCAGGTGTTCGTGGGCCAGGCGGAATTGAATTTGGAGAATCAGGAGAGGCAAGAGGCTGTGAAGGAAATCCAACGGAGCTTGATGGAGTTGCACCAAGTCTTTCTTGATATGGCGGTTCTGGTCGAGTCACAAAGTGAATCCATGGATGATATCGAATTGAATATGGCCCGGGCTGGAGATTTCATCAGTGGTGGAACCGACGGACTTGTATCTGCTAATGCCATGAAGAAGAAGGACAGGAGATTGGTCCTTTGGGTTTGGATTGTGGTGCTGGTCCTTATCTTGGTTGGCCTTGTGTCCAGGTGCTTTTAA 894 0.4754 MNDLMTKSFLSYVELKKQARKDIQAGPDIEMGRLGPTDEESLGQFFQEVGAIKNEMEEITNLLLDLQDLNEETKSTHSAKVLRGLRDRMDSDMVTVLRKAKIIKTRLEALDRSNVANRSVSAAYREGSPVDRTRISVTNGLRIKLRDIMNDFQSLRERIISDHKEGLKRRYFNVTGEEPSEEVINKMVSTGGQVQVFVGQAELNLENQERQEAVKEIQRSLMELHQVFLDMAVLVESQSESMDDIELNMARAGDFISGGTDGLVSANAMKKKDRRLVLWVWIVVLVLILVGLVSRCF* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01927 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Eupl03g01927 297 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl03g01927 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Eupl03g01927 297 Gene3D - 37 167 - -
Eupl03g01927 297 SMART SynN_4 37 164 IPR006011 GO:0016020
Eupl03g01927 297 Gene3D - 198 294 - -
Eupl03g01927 297 FunFam Syntaxin 132 199 296 - -
Eupl03g01927 297 CDD SNARE_syntaxin1-like 208 264 - -
Eupl03g01927 297 CDD SynN 42 194 IPR006011 GO:0016020
Eupl03g01927 297 Coils Coil 52 76 - -
Eupl03g01927 297 SUPERFAMILY t-snare proteins 41 259 IPR010989 GO:0016020|GO:0016192
Eupl03g01927 297 PANTHER SYNTAXIN 40 286 IPR045242 -
Eupl03g01927 297 SMART tSNARE_6 199 266 IPR000727 -
Eupl03g01927 297 Pfam Syntaxin 44 238 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01927 Eupl-Chr3 47910420 47911710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01927 1 294 SNARE and Associated Proteins AT2G18260 58.086 5.51e-121 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01927 K08486 - nnu:104601838 434.491