Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01909 ATGTCGTTCAAAAGCATTGTTCGCGAGCTGAGAGAGATAAAAGATGGGATTGGGAACACGTCGAAGCGAGGGGTAGAAGGGAAGCATGTTCACAGCCGGATGGGGTCGCTCAACATGGTCGATGGGTCTCAGTTTCAATCTGGATCATTTCAACAGAGCCGATGGGCAAATCTACCCCCAGAATTGCTCCTTGATGTGATCCAGAGGCTAGAAGCCAGCGAGACATCATGGCCTGCGAGGCGACACGTTGTCGCATGTGCTTCGGTTTGCAGATCATGGAGGGAGATTACAAAGGAGATTGTTAAGACTCCAGAGGAATGTGGAAGGCTCACCTTTCCAATCTCATTGAAGCAGCCAGGACCGCGTGATTCTCCAATACAATGCTTTATCAGAAGGGAAAGAGAGACTTCTACGTATTGTCTGTATCTTGGTCTGTCCCCTGCTCCATTGGGGGAGAACGAGAAATTGTTGTTTGCAGCTAGAAAGATGAGAAGGGGAACAAGGATGAATTTTGTGATATCCTTGGTCACAGATGATTTCTCTCGAGGGAGCAATACATATATTGGCAGACTAAGGTCCAATTTTCTGGGCACCAAGTTCACCATTTATGACAGCCAGCCCCCATATGACACTGCAGTCCAATCGAACAGTAGGTCCAATAGAAGAATCTATTCCAAACAGGTATCTCCAAGAGTCCCTGCTGGTAATTACAACACAGCCACCATCTCCTATGAGCTCAATGTTCTCCGCTCCAGAGGCCCCAGGAGAATGCAATGCACCATGCATTCTATCCCTGTCTCTGCAATTCAAGAAGGGGGGACTGCCCTGACGCCGACCGCATTCTCAAACTCCCTCGAGGAGCAATTTTTGCTCCCATCGGTTCCAAAAGCCAAAGACCCCCTTGTGGATTTCAGTTCCCCAATCCTCTCAGAACCACTGATATCAGTCCAGGGCACAGGAGAGCCATTGGTTTTGAAGAACAAAGCACCTAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAATTTCAGAGGACGTGTTACTGTGGCTTCTGTTAAGAACTTCCAGCTCGCGGCAACTGTGGAGCCTTCCCACCATGTTTCACTGGCAGAGCAGGAGAAAGTCATACTACAGTTTGGGAAGATAGGGAAGGACATCTTCACCATGGATTATTGCTACCCGCTTTCTGCCTTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACTAAACCGGCCTGCGAATGA 1248 0.4888 MSFKSIVRELREIKDGIGNTSKRGVEGKHVHSRMGSLNMVDGSQFQSGSFQQSRWANLPPELLLDVIQRLEASETSWPARRHVVACASVCRSWREITKEIVKTPEECGRLTFPISLKQPGPRDSPIQCFIRRERETSTYCLYLGLSPAPLGENEKLLFAARKMRRGTRMNFVISLVTDDFSRGSNTYIGRLRSNFLGTKFTIYDSQPPYDTAVQSNSRSNRRIYSKQVSPRVPAGNYNTATISYELNVLRSRGPRRMQCTMHSIPVSAIQEGGTALTPTAFSNSLEEQFLLPSVPKAKDPLVDFSSPILSEPLISVQGTGEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLAATVEPSHHVSLAEQEKVILQFGKIGKDIFTMDYCYPLSAFQAFAICLSSFDTKPACE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01909 415 Pfam Tub family 116 410 IPR000007 -
Eupl03g01909 415 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
Eupl03g01909 415 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Eupl03g01909 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Eupl03g01909 415 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Eupl03g01909 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Eupl03g01909 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Eupl03g01909 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Eupl03g01909 415 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Eupl03g01909 415 Pfam F-box domain 55 102 IPR001810 GO:0005515
Eupl03g01909 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Eupl03g01909 415 Gene3D Tubby Protein; Chain A 115 409 IPR025659 -
Eupl03g01909 415 Gene3D - 49 101 - -
Eupl03g01909 415 CDD F-box_AtTLP-like 55 99 - -
Eupl03g01909 415 PANTHER TUBBY-RELATED 35 413 - -
Eupl03g01909 415 SUPERFAMILY F-box domain 44 98 IPR036047 GO:0005515
Eupl03g01909 415 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Eupl03g01909 415 FunFam Tubby-like F-box protein 50 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01909 Eupl-Chr3 47632074 47648652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01909 1 415 TUB Transcription Factor Family AT2G18280 56.971 2.35e-164 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Eupl03g01909 Tub 4.8e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01909 K19600 - msin:131237967 671.389