Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01906 ATGAACAGAACTCTACCGGAGATGCTACACTGTCTACAAACGCCGGAAAATATCGCCGTAAATGGTACGGACCTGACTGTGTTTGAGAGACAAAAAGCTCGTCTGAAATGGCCGCAACAACTTCAACAGCAACAACAACAATCTCAGCAACCTCAAAAAAGCTATTTTAATGACACCCATTTGAATCTTTTGCCTCTACCGTCAACAACCCAACAGTTTCAGAGTGCTTTGATCAACAACGACTCGATTACTAGAGAGCTTGCAAACAGTTCAATGAAGGCCGACCCGGGTTTGGAAAATGGGTGGCCAGATTTCGGGAAATACCCGATACCTAGAGCCGGTTTTGGTGGGGAGACGGCGGGGTTTCTCTCAATTGGGTCTGCCGAGACGGATCACCCCATTTCGAGGACTTCTAGTTCTCCACTGGCGGTGGCGGAAGAGAAAGGTATAGGGATGAGTCTAACGGAGAAAACGGCATCGACTGTTGGGAGAGAGAGCTTCAAGAAGAGGAAAGCAGATAAGGCACAGAACCCAAAGGTAGGTGTGGCAGAGGATGCAAGAGACAAGAGGATCAAAGGAGATACAGAAGAGGTCGAGTCCAAGGTCACAGAACAAAACAACAACAGCAACAATAGAGAAACCTCTGCAGATACTTCAAAAGAGAATTCAAAGGTTTCTGAGGTTCAAAAGCCAGATTACATCCATGTTCGAGCTCGTCGCGGCCAGGCCACCGATAGCCACAGCTTAGCTGAACGAGTGAGAAGGGAAAAGATAAGTGAAAGGATGAAATATCTGCAAGATTTAGTCCCTGGGTGCAACAAGATCATCGGCAAGGCCGGAATGCTCGACGAAATCATCAACTATGTTCAGTCTCTTCAAAGACAAGTAGAGTTCCTGTCCGTGAAACTCGCCACCGTTAATCCCAGGCTTGAGTTCAACATCGACAATTTCTTCGCCAAAGAGATGTTTCCGCCTTGCTCCAGTAGTATCCCGACATTGGGGATGTTATCAGAAATGGCTGATCCAAATTACCTTCAGTTTAATCCGGTGCAACAAATAGCAAGTACCCCTGAAATGGATCTTCGAAGAACCGCCATAAGCGCACCTGTATCAGCGCCTGAAGCTTTCCTTGATTCTTCATGCTTCACTCAACTTCAAGTTCAACCCTCTTGTTCTACTTGGGAGACTGATTTACAAAGTCTTTACAATTTGGAGTTCCATCAAGGAAGACCAAATGCTTTTCCATCTCAAACATTTGCAGGCATCCAAGAGGCTAACAATCTCAAGATGGAGATGTGA 1299 0.4611 MNRTLPEMLHCLQTPENIAVNGTDLTVFERQKARLKWPQQLQQQQQQSQQPQKSYFNDTHLNLLPLPSTTQQFQSALINNDSITRELANSSMKADPGLENGWPDFGKYPIPRAGFGGETAGFLSIGSAETDHPISRTSSSPLAVAEEKGIGMSLTEKTASTVGRESFKKRKADKAQNPKVGVAEDARDKRIKGDTEEVESKVTEQNNNSNNRETSADTSKENSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIIGKAGMLDEIINYVQSLQRQVEFLSVKLATVNPRLEFNIDNFFAKEMFPPCSSSIPTLGMLSEMADPNYLQFNPVQQIASTPEMDLRRTAISAPVSAPEAFLDSSCFTQLQVQPSCSTWETDLQSLYNLEFHQGRPNAFPSQTFAGIQEANNLKMEM* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01906 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 292 IPR011598 GO:0046983
Eupl03g01906 432 MobiDBLite consensus disorder prediction 155 230 - -
Eupl03g01906 432 CDD bHLH_AtBPE_like 232 317 - -
Eupl03g01906 432 MobiDBLite consensus disorder prediction 202 216 - -
Eupl03g01906 432 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 100 351 IPR024097 GO:0006355
Eupl03g01906 432 SMART finulus 248 298 IPR011598 GO:0046983
Eupl03g01906 432 Gene3D - 239 314 IPR036638 GO:0046983
Eupl03g01906 432 FunFam Basic helix-loop-helix transcription factor 239 311 - -
Eupl03g01906 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 310 IPR036638 GO:0046983
Eupl03g01906 432 MobiDBLite consensus disorder prediction 162 201 - -
Eupl03g01906 432 Pfam Helix-loop-helix DNA-binding domain 246 293 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01906 Eupl-Chr3 47606317 47609970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01906 111 402 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 43.614 3.09e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g01906 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01906 - - vvi:100252098 497.278