Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01905 ATGGGGAGTGATGCAGCCGAAGTTGAAGTGCTACCACATACTCGTGCCATAAAGGTGCATCGTTTAATGTGTGCGGAGCTTATGAAATTTGTTGATAGAATCTCACAGATATTCCCAGCCATAGAATCAGCTCGACCACGATGCTCATCGGGAATAGGAGCACTGTGCTCTTTAAACCAGGCTATGGACAAAGCCAAGTTAATTCTTCAGTATTGCACTGAATCTAGCAAGCTCTATTTGGCAATCACGGGGAATGCGATAGTGTCGAGATGTGAAAAAGTACGAAATGCATTGGAGCTAAGTTTAAGTCAAATTCAAAATTTGGTTCCACTACTATTGGCTGCGCAGATATCTGGAATTGTTGATGATCTTAGAGATGCAAAGTTCAGTATGGAATCTTCTGAAGAAAAGGCTGGCAAGGTTGTAGTAGCATTGCTCCTCCAAGAATCAGTTTCAAGTGAAACTTCTGAGTTTCAGGCTTTTCAAATTGCAGCCCTGAGTCTGCATATTACATCCCCAAAGGCTTTCTTGATAGAGAAACGATCTATTAAAATGCTACTCCGTAAAGTCCGTGATACTGATCAGAAAAAGGCAACAATTCTGATCAATCTCCTATCCATTTTGAATAAGTATGAAAAATCAATTGGGGGTGAGCAAACAGTGAATGTCAGTGGTCAGTGTGAAGGTTTGTGTTCAAGCACAAACTCTGCGTGCAATAGTGCTGTATGTGATCAGTCTATTGAGCCGGCACCACATGTAGGATTTCTTTCTAGTACACCCATACCTCCTGAGGAATTCAAGTGCCCTATTTCTTTCAAACTCATGCATGATCCTGTTGTCATAGCTTCTGGGAAAACATTTGAAAGGGTGTGGATAGAGAGGTGGTTCAACGAGGGTCATGATACATGTCCAAAGACTCAAAAGAAGCTGTCCCATCTTTCTATTGTTCCAAACTCTGACATGAAGAATCTTATTTCCAAGTGGTGTAGGGAGCAGGGGATCAGTATCCCTGACCCATGTGCACAACTGATTCCTGCAGCACTTCTCTCATGGAAAACTTCCTCTTCCAGTTCCATAGCTAGTTTAGGCAGTTCTCTAAATGATGTCCCTATACGAATTGATGTCAGCAATGTATCTTTTGGCTCTTCGTATACTAGTTCTTGTTCAGACTCATCACAGATTAAGATCATAGATAGTTTAAGTTTGGGTTCCCCTCGGATGTGTTCTGTAAATTTTGGCCACGGGACGAATTCAAGGTTTCTCCCTAAACTTGATGCACTTCCTTGGGAATCCCAATGCAAAGTAGTGGAGGATGTCAAAAACCAGTTGAAAGACAATGATCAGGCATGTCATTCTATGCTTTCTAAGAGTATTGTCGAATCACTGATTAGATTTTTGAAGGATGCATCTGACCGGCACAATGTTAAAGCACAGCAAGTTGGAGCTGAGGTGCTTTTGGCATTTGTGAGTAAGAGCAGAAGTGAAATACCATACCTATGTGAAGATTTATTTCATCTGTTGGCTTCTTTTCTCGATTCCAAAATCACTGAAGAAGCTCTGGCAATCATGCAAGTATTGTCCGACGACCAGTGTTGTAAATCCAAAATCATGGCATCTGGTGCTCTTCCTTCCATCCTAAAGATTATCAACTCCCAAAGCAGAGAATTCCAGACTCCTGCGGTTAAAATATTGTATAATTTGTCCTCACACAGCAACATTGGATCTCACATTCTATTCTTAGGGTGTGTCACCAAGCTGATTCCACTTTTGGGCGATAGCTCACTGGCAGGACATTGCATAAAAATTCTGAAAAATTTATGCAACACTGAAGAGGGTAGGTTTGCGATTGCTGAAGCCAATGGCTGTATTGCTTCCATTGCAGAACTAATTGAGACTGGCACTCACGAGGAACAAGAACATGCAGTGGCCGTTCTCCATTCTTTATGTTCTCACCATTTCGAGCATTGTTTATTGGTCCTGAACGAGGGTGTTATCCCATCTCTAGTCGATGTATCTATCAATGGCAATACCAAAGGGAAGGAGAACGCAAAGGAATTACTCCGGCTCTTGAGGGATATCAGATATAGTGATTCTGTAGAAAGTTCACCCCCTGCTACTGGATCCAATCTCGAATTGCCATGGGACTCGGGCAACTGCTCTATAGAAAAGAAACCATCTTCGAAGGTTCCCAGATTTTTTGGAAGGAAAATCACAATATTCGCAAAACACAGATCTTCGGCTCGCGTGAATTGA 2253 0.4203 MGSDAAEVEVLPHTRAIKVHRLMCAELMKFVDRISQIFPAIESARPRCSSGIGALCSLNQAMDKAKLILQYCTESSKLYLAITGNAIVSRCEKVRNALELSLSQIQNLVPLLLAAQISGIVDDLRDAKFSMESSEEKAGKVVVALLLQESVSSETSEFQAFQIAALSLHITSPKAFLIEKRSIKMLLRKVRDTDQKKATILINLLSILNKYEKSIGGEQTVNVSGQCEGLCSSTNSACNSAVCDQSIEPAPHVGFLSSTPIPPEEFKCPISFKLMHDPVVIASGKTFERVWIERWFNEGHDTCPKTQKKLSHLSIVPNSDMKNLISKWCREQGISIPDPCAQLIPAALLSWKTSSSSSIASLGSSLNDVPIRIDVSNVSFGSSYTSSCSDSSQIKIIDSLSLGSPRMCSVNFGHGTNSRFLPKLDALPWESQCKVVEDVKNQLKDNDQACHSMLSKSIVESLIRFLKDASDRHNVKAQQVGAEVLLAFVSKSRSEIPYLCEDLFHLLASFLDSKITEEALAIMQVLSDDQCCKSKIMASGALPSILKIINSQSREFQTPAVKILYNLSSHSNIGSHILFLGCVTKLIPLLGDSSLAGHCIKILKNLCNTEEGRFAIAEANGCIASIAELIETGTHEEQEHAVAVLHSLCSHHFEHCLLVLNEGVIPSLVDVSINGNTKGKENAKELLRLLRDIRYSDSVESSPPATGSNLELPWDSGNCSIEKKPSSKVPRFFGRKITIFAKHRSSARVN* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01905 750 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 570 IPR000225 GO:0005515
Eupl03g01905 750 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Eupl03g01905 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 336 IPR013083 -
Eupl03g01905 750 Gene3D - 423 573 IPR011989 -
Eupl03g01905 750 Pfam U-box domain 263 332 IPR003613 GO:0004842|GO:0016567
Eupl03g01905 750 SUPERFAMILY ARM repeat 429 690 IPR016024 -
Eupl03g01905 750 CDD RING-Ubox_PUB 263 313 IPR045210 -
Eupl03g01905 750 Gene3D - 580 691 IPR011989 -
Eupl03g01905 750 SUPERFAMILY RING/U-box 262 338 - -
Eupl03g01905 750 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Eupl03g01905 750 PANTHER U BOX DOMAIN-CONTAINING 24 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01905 Eupl-Chr3 47578284 47591260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01905 15 693 U-box Gene Family AT4G36550 38.384 1.74e-133 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01905 - - ming:122078825 853.588