Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01904 ATGGCATCCAGCTCTATGCGTAGCTCCAGTTCATCTTGGACAACCAAACAAAACAAATTGTTTGAAAAGGCCCTGGCCCTATATGACAAGGATACCCCAGACCGCTGGCAGAATGTAGCCAGGGCTGTTGGTGGGAAATCTGCCGAGGAAGTGGAGAGACATTACAAGATCCTTATAGAGGATCTCAAGCACATCGAGTCTGGCCAAGTCCCCATCCCCAATTACAGGTCTACTGGAGGGAGCAACGGCAGAGGCCTCGGCGATGAAGAGGAGAGGCTTCTGAAGCACCTAAAGCTCCGATGA 303 0.5149 MASSSMRSSSSSWTTKQNKLFEKALALYDKDTPDRWQNVARAVGGKSAEEVERHYKILIEDLKHIESGQVPIPNYRSTGGSNGRGLGDEEERLLKHLKLR* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01904 100 CDD SANT 13 56 IPR001005 -
Eupl03g01904 100 Gene3D - 3 72 - -
Eupl03g01904 100 FunFam Transcription factor SRM1 5 72 - -
Eupl03g01904 100 SMART sant 9 61 IPR001005 -
Eupl03g01904 100 ProSiteProfiles SANT domain profile. 8 63 IPR017884 -
Eupl03g01904 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 84 IPR044636 GO:0003700
Eupl03g01904 100 ProSiteProfiles Myb-like domain profile. 5 59 IPR001005 -
Eupl03g01904 100 Pfam Myb-like DNA-binding domain 11 56 IPR001005 -
Eupl03g01904 100 SUPERFAMILY Homeodomain-like 12 66 IPR009057 -
Eupl03g01904 100 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01904 Eupl-Chr3 47558622 47560364 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl03g01904 Myb_DNA-binding 9.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01904 - - psom:113288076 143.665