Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01901 ATGGAATTGAGAGGCCAAAACAAGGAAATAGAGATGCCGATTTCTTTAGGTTATAACCCTCCTCTTCGAGAACCATCATCTAAGGTGTCCTCCACAACAATTATTTCAACAATAGGAGGAGGAGGAGGAGAAAGAAGAAGAGATGGGACTGGTAATGGAACTGCAATATTCCATCCATCTCAAAACCTAGATCATCATCATCACAATCACCACCGTCATCAACAATCACCACAACCGCCAGAACGTAGCCAAAGAGATCCAGACCCAGATCCAGTTCCAGTCTCAATTGCAGTTTCTGGTGCAACAGGTGCACCTATTATAGGTGGATCAACCCCGAGGACTCCAACAACCAAGACTGCAGTCTCCATCCGGTACCGAGAATGTCTAAAGAACCATGCTGCGAGCATAGGTGGACATGTCATCGATGGCTGTGGAGAATTCATGCCGAGTGGCGAGGAAGGAACACCAGAAGCCCTAAAATGCGCAGCGTGCGATTGTCACCGGAACTTTCACAAGAAGGAAGTGGAGGGAGAGACTCAATCCGGTGCGAATTGCTATTACTACTACAACACAAATAACAAGACGAACAACGGAAGAAGTAGAATTCCTCCTCCACTACCTCCACCGGCGCTACCTCCTCCACCAACGATGATGAATTTTGGTGGCTATGGAGGCGGAGGCGTAGCGACCGAATCATCAAGCGAGGATCTGAATGTATTCCAGTCCAATAATGGGACACCAGCACTGCCTCCGCCATCGTTCGCCATATCAAAGAAACGGTTTCGGACGAAATTCACTCAGGAGCAGAAAGACAAGATGTTGGAATTCGCTGAGAAGGTTGGTTGGAGGTTCCAGAAGGAAGACGAGCCAGCAGTCCAGCAGTTTTGTGCTGAGGTGAGTGTCAAGAGACAAGTTCTCAAGGTTTGGATGCACAACAACAAGAACTCATTGAAGAAGAAGGAGATCGATTAA 972 0.4763 MELRGQNKEIEMPISLGYNPPLREPSSKVSSTTIISTIGGGGGERRRDGTGNGTAIFHPSQNLDHHHHNHHRHQQSPQPPERSQRDPDPDPVPVSIAVSGATGAPIIGGSTPRTPTTKTAVSIRYRECLKNHAASIGGHVIDGCGEFMPSGEEGTPEALKCAACDCHRNFHKKEVEGETQSGANCYYYYNTNNKTNNGRSRIPPPLPPPALPPPPTMMNFGGYGGGGVATESSSEDLNVFQSNNGTPALPPPSFAISKKRFRTKFTQEQKDKMLEFAEKVGWRFQKEDEPAVQQFCAEVSVKRQVLKVWMHNNKNSLKKKEID* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01901 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 125 174 IPR006456 -
Eupl03g01901 323 MobiDBLite consensus disorder prediction 1 118 - -
Eupl03g01901 323 Gene3D - 252 319 - -
Eupl03g01901 323 FunFam Zinc-finger homeodomain protein 2 251 319 - -
Eupl03g01901 323 Pfam ZF-HD protein dimerisation region 123 175 IPR006456 -
Eupl03g01901 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 84 316 - -
Eupl03g01901 323 MobiDBLite consensus disorder prediction 24 38 - -
Eupl03g01901 323 NCBIfam homeobox domain, ZF-HD class 258 315 IPR006455 -
Eupl03g01901 323 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 124 175 IPR006456 -
Eupl03g01901 323 MobiDBLite consensus disorder prediction 74 88 - -
Eupl03g01901 323 SUPERFAMILY Homeodomain-like 253 319 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01901 Eupl-Chr3 47532949 47533920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01901 105 322 ZF-HD Transcription Factor Family AT2G18350 51.131 9.82e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl03g01901 ZF-HD_dimer 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01901 - - nnu:104601849 378.252