Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01897 ATGCAACGCTGCAGCAGCTCTCATGGGAATCCGACGGGTCCGTGCTCCTGCGGCTTGTTTCATGCTCCGAGCAATTCCTTCTCCATGTTATTCTCTATGCCTAATCACAGGCCGTTCGATGAAGTTGATGCATATCCACCTACCTCCTCTTCGTCTTCTGTTGATTGCACTCTCTCTTTAGGGACTCCTTCTACTCGTCAAACCGACTATAAGTCGACTGGTCATCACCGAAGATCCGGTTCCTGCGTGTGGGATATATTTCAGACCAAGCAGTCTCCTTCATCAACACGTACCCATAAGAGCAGCCGAGGAGGTAGTAGTGGCAATACTAGTGTCATCAACAATGTGAGTACTGGTGATTCTCTTGTCACTCGAAGGTGCGCCAACTGCGATACGACATCTACTCCTTTATGGAGAAACGGACCTCGAGGCCCCAAGTCACTTTGCAATGCGTGTGGAATTCGTTACAAGAAGGAAGAGAGACGCGCCACCACAGCCACCGCTACTGTAGCGACCGTTATAGAACCCCAACACCACCACTCATGGGCCCACCACACACAGACTCAGAAGGTGCCTTCCATGTCTTCAGCTTCTTTCGGCAATGAATTCAGGTTCATCGAAGGCGAGGATAGAGACTCCGACACCGGTATTCCTCTCCTTTCATGGCGTCTCAATGTTTCGGACCGACCTAGCCTCGTCCATGACTATACATGA 714 0.507 MQRCSSSHGNPTGPCSCGLFHAPSNSFSMLFSMPNHRPFDEVDAYPPTSSSSSVDCTLSLGTPSTRQTDYKSTGHHRRSGSCVWDIFQTKQSPSSTRTHKSSRGGSSGNTSVINNVSTGDSLVTRRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRATTATATVATVIEPQHHHSWAHHTQTQKVPSMSSASFGNEFRFIEGEDRDSDTGIPLLSWRLNVSDRPSLVHDYT* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01897 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 162 - -
Eupl03g01897 237 ProSiteProfiles GATA-type zinc finger domain profile. 125 157 IPR000679 GO:0006355|GO:0043565
Eupl03g01897 237 Gene3D - 123 194 IPR013088 GO:0006355|GO:0008270
Eupl03g01897 237 PANTHER GATA TRANSCRIPTION FACTOR 18 11 237 IPR044272 GO:0003700|GO:0009908
Eupl03g01897 237 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Eupl03g01897 237 MobiDBLite consensus disorder prediction 90 116 - -
Eupl03g01897 237 MobiDBLite consensus disorder prediction 45 69 - -
Eupl03g01897 237 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Eupl03g01897 237 SMART GATA_3 121 171 IPR000679 GO:0006355|GO:0043565
Eupl03g01897 237 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Eupl03g01897 237 MobiDBLite consensus disorder prediction 45 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01897 Eupl-Chr3 47475505 47476781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01897 16 237 C2C2-Gata Transcription Factor Family AT3G50870 43.860 1.28e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl03g01897 GATA 6.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01897 - - nnu:104601855 346.665