Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01885 ATGGCTTCTTCAGATGTTGAATTCCGATGCTTTGTCGGCGGACTTGCATGGGCCACCGACGACCAGTCCCTCGAGAAGGCTTTCAGTGCTTTCGGCGACATCCTCGAATCAAAGATCATCAGCGATCGTGAGACTGGGAGATCAAGAGGGTTTGGGTTCGTTACGTTCGCTAACGAACAGGCGATGAGGGATGCCATCGAAGGAATGAACGGACAGAATCTTGATGGTCGGAGTATCACTGTCAACGAGGCCCAATCCAGGGGAAGCGGCGGCGGCGGTGGCGGAGGATTCCGCAGCGGTGGTGGCGGTGGATACGGAGGTGGTGGTGGCGGTGGATACGGTGGTGGCGGTGGATATGGTGGTGGTGGTGGGCGACGTGATGGCGGTGGCTACAGCCGCGGCGGTGGTGGGCGCCGTGATGGCGGTGGCTACGGTGACGGTGGATCGCGCTACTCCAGGGGAGGTGGTGCTTCAGATGGGAACTGGAGGAGTTAA 495 0.598 MASSDVEFRCFVGGLAWATDDQSLEKAFSAFGDILESKIISDRETGRSRGFGFVTFANEQAMRDAIEGMNGQNLDGRSITVNEAQSRGSGGGGGGGFRSGGGGGYGGGGGGGYGGGGGYGGGGGRRDGGGYSRGGGGRRDGGGYGDGGSRYSRGGGASDGNWRS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01885 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Eupl03g01885 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Eupl03g01885 164 MobiDBLite consensus disorder prediction 73 87 - -
Eupl03g01885 164 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Eupl03g01885 164 Gene3D - 2 120 IPR012677 -
Eupl03g01885 164 PANTHER GEO13361P1-RELATED 3 156 - -
Eupl03g01885 164 FunFam Glycine-rich RNA-binding protein GRP1A 2 113 - -
Eupl03g01885 164 CDD RRM2_NsCP33_like 9 84 - -
Eupl03g01885 164 SMART rrm1_1 9 82 IPR000504 GO:0003723
Eupl03g01885 164 MobiDBLite consensus disorder prediction 70 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01885 Eupl-Chr3 47334175 47335894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01885 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 36.709 8.80e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01885 - K13195 msin:131228732 159.844