Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01881 ATGTCCACAGCACCAACAGCATCTTCGGCCGTCTACCCATGGCTCCGCCTCCGGCTCAACAGTAACCCTAATACAACAGCCATTCTCCACTTCACCTCTACAACCACCACCATCACCAGGCGCCCCAAGCCTTTCATCTCTTCCTCCGTTCACCATCACCATCAAACGCCGCAGAAAATCGAGGACGAGAACAGAGTAATCAATGAACAAATTCTCCGCCAGCACAACGCGAGATCTACGTCTCTCCTCCTCCATCGCCTCTCCCATCAAGAAGAAGAAGGAGAAGCAGAATCCGTGCCAGAACAAGAAGAAGACGAAGACGAGAGAGTAAAACTGTTGGAGATGTCCCTTGTTAGAAGAAGGACCCCTCAATTCCCAGGTTCTATCTACTTACAATCCTCTACTGGTGACTACACGAAATCATCTCGTCCGCCTCTTCTCGGCCACATTGGCGACGATAAGATGCTAAAGCAGGCCCTTGAAATACGGCGCAAGGTTACATTAGAGATTTTCAAGGAAGCCATGCGGAGCGCCAAGTTCAGCATCACTTACTCTACTAATTTGGTCTCTCGGTTACCCGATTTCATCGACCATGTCATGATTGAAGCTGCATCGATGAAGCGCTTACCTGAATTCTCACACTCCACCTTCAACGCCAGAGCTAAGACCTTCATACAGAATTCCAATGTCGTCCCGCTTATAAGGTGGTTGAAACACAATTCATTGACTTATCCTCAAATTGGGAAGCTCATTTGTATGTCGCGTGGAAATCTTGAGTCGATAAGGCAATCGGTTGAGTGGTTGAAAAAGATTTATGTGAAAGGGAAATTTCTTGGGGTCGTGCCTATAAAAGCAGGAGGAGGTGTCTTGGAGCGTAGTCCAGAAGAATTGGACGAGGTTGTTTGGTATCTCGAATGCAGTGGAGTTAGGAGGGACTGGATGGGGTTCGTCGTTAGTCGGTGTCCGCAAATCTTGTCTTACACCATGGAAGAAGTGAGATCTCGTGTGAGTTTCTACATGGATATGGGTATAAATGAGAAGGATTTTGGCACGATGGTTTTTGATTATCCCAAGGCACTTGGCTTCTTCACTCTGGAAGAGATGAACTGTAAGGTTAAATACCTTAAGGAGTTCGGCCTAAGTGATGAAGATGTTGGGCGACTACTAGCATTCAAGCCACAATTGATGGGTTGTAGCATTGAGGAAAGATGGAAGCCTCTTGTGAAGTATCTATATTATCTAGGGGTTCGTCGTGATGGTATGAGGAGAATACTTACACTTAAACCAATGGTCTTCTGTGTTGATCTAGAGACAACCATTGCGCCGAAGGTGCGATTTTTACAGGACATTGGCATTCGGGAAGATGCCATTGGTGGCGTGCTAGTCAAATTCCCGCCATTATTAACGTATAGCCTCTACAAGAAAATCCGCCCAGTGGTCATTTTCTTATTGACAAAAGCTGGAGTTACCCAGAGAGACATTGGGAAAGTCATAGCCTTGGGACCAGAGCTTGTTGGATGCAGCATTATAAATAAGCTGGAAGTTAATGTTAAGTACTTCCTGTCTCTGGGCATTCCTCTTCGATTGCTCGGTGAGATGATTTCGGATTTTCCCATGCTGCTGAGATACAATTTGGATGTTCTCCGTCCCAAGTACCGGTACTTGCGGAGAATCATGGTTCGCCCATTGCAGGATCTCATAGAGTTCCCCAGATTTTTCAGTTATTCCCTCGATGGTAGAATAATTCGAAGGCACAAGGTTCTGGTGGAAAACCGAGTCAACTTCAAGCTGCGGTACATGTTGGCAAGCACTGATGAGGAGTACTACAAGAGGGTAGAGGCTGCAGTCGAAAGGCGCAGAAGGTTCGAATCCGGTGTCATGAATGGTCCTTTTGATAACTCCATAGAGAGGATTCAAGCTGATAATTCAGGAGAAAATAATTCTGAAGGTTCCTTATCTTTGTCGGAGTCTCCACTTTAG 1980 0.4611 MSTAPTASSAVYPWLRLRLNSNPNTTAILHFTSTTTTITRRPKPFISSSVHHHHQTPQKIEDENRVINEQILRQHNARSTSLLLHRLSHQEEEGEAESVPEQEEDEDERVKLLEMSLVRRRTPQFPGSIYLQSSTGDYTKSSRPPLLGHIGDDKMLKQALEIRRKVTLEIFKEAMRSAKFSITYSTNLVSRLPDFIDHVMIEAASMKRLPEFSHSTFNARAKTFIQNSNVVPLIRWLKHNSLTYPQIGKLICMSRGNLESIRQSVEWLKKIYVKGKFLGVVPIKAGGGVLERSPEELDEVVWYLECSGVRRDWMGFVVSRCPQILSYTMEEVRSRVSFYMDMGINEKDFGTMVFDYPKALGFFTLEEMNCKVKYLKEFGLSDEDVGRLLAFKPQLMGCSIEERWKPLVKYLYYLGVRRDGMRRILTLKPMVFCVDLETTIAPKVRFLQDIGIREDAIGGVLVKFPPLLTYSLYKKIRPVVIFLLTKAGVTQRDIGKVIALGPELVGCSIINKLEVNVKYFLSLGIPLRLLGEMISDFPMLLRYNLDVLRPKYRYLRRIMVRPLQDLIEFPRFFSYSLDGRIIRRHKVLVENRVNFKLRYMLASTDEEYYKRVEAAVERRRRFESGVMNGPFDNSIERIQADNSGENNSEGSLSLSESPL* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01881 659 Gene3D Transcription termination factor 3, mitochondrial 390 622 IPR038538 -
Eupl03g01881 659 SMART mt_12 386 417 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 SMART mt_12 495 526 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 SMART mt_12 422 453 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 SMART mt_12 563 594 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 SMART mt_12 315 345 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 SMART mt_12 458 490 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 SMART mt_12 531 561 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 SMART mt_12 350 381 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 Pfam mTERF 260 341 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 Pfam mTERF 331 608 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 MobiDBLite consensus disorder prediction 88 108 - -
Eupl03g01881 659 PANTHER CGI-12 PROTEIN-RELATED 289 389 IPR003690 GO:0003690|GO:0006355
Eupl03g01881 659 MobiDBLite consensus disorder prediction 637 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01881 Eupl-Chr3 47269112 47279748 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Eupl03g01881 mTERF 2.9e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01881 K15031 - nnu:104595685 899.042