Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01856 ATGGATGTTGAGCATGAGATGAAGAATGATGGAACTGCAGATTCTCCAACTTCCGTGCTCGAAGACGAGGAGATATGCAAGGAGGAAATCAAAGTCGAATCAGAGGACAACATACTTCTATCCATTGATGCGAAAAACGGAGACTCTTCTCTTATATCGAAAGCCATGGCTGAGGAGGAAGAGAAACTACAAGAAACCCGAGTGAAGGAGGAGGACTTAGAAAGGGAGAAAACGAATGTGGCGGTACCCGTCGTGAATGACACCCAGTTCACCAAATTGGATGAGCTTCTAACACAGACTCAGATGTATTCAGAGTTCCTGCTGGAGAAAATGGAGGACATCACATTTAATGGACCGGAGAATCAAAATGAAGAAGCCGTCAAAGGGAAGAAAAGAGGTCGTGGTGGGAAGAGGAAGGCTGCTGCTCAATATAACAACAGAAAAGCCAAGAAGGCAGTTGCAGCCATGTTATCAAGATCCCAAGAAGGCACTGCTCCTGAAGATGCCAACCTCACCGAGGAGCAGAGAGTTGACAAAGAGCAGGCTGAACTTGTTCCGTTATTGACCGGTGGAAAATTGAAGCCTTATCAAATCAAAGGCGTGAAGTGGTTGATTTCATTGTGGCAAAATGGACTCAATGGGATTCTAGCAGATCAAATGGGGCTTGGCAAGACAATTCAAACTATTGGTTTTCTTGCGCATTTGAAAGGGAAGGGCTTGGATGGGCCTTACTTAGTAATTGCTCCACTTTCTACTCTATCAAATTGGGTAAATGAGATCTCGAGGTTTGTTCCTTCAATGAGCTCGGTTATTTACCATGGAGATAAGAAAGAAAGGCAGGAAATAAGAAATAAGTACATGTCCAGAGCAATTGGCCCCAAGTTCCCCATTGTAGTTACTTCTTATGAGGTTGCAATGAATGATGCAAAAAAATATTTAAGGCATTACAGTTGGAAATATGTTGTGGTAGATGAGGGGCACCGGCTGAAAAATACCAAGTGCATATTATTGAGAGAATTGAGGCACTTGCCCATGGAAAATAAGCTTCTACTAACTGGAACGCCTCTGCAGAACAACTTGGCTGAACTTTGGTCATTGTTGAACTTCATTTTGCCTGATATTTTCTCATCCCATGAAGAATTCGAGTCTTGGTTTGATCTGTCGGGGAAGTGCAACAATGAAGCCCAGCAGGAAGAGTTGGAAGAGAAAAGAAGGGTTCAAGTGTTATCCAAACTCCATTCAATATTACGCCCCTTTCTCCTACGAAGATTGAAGTCAGAAGTTGAGCAGATGCTTCCTCGAAAAAAAGAAATTATTTTATATGCCAGCATGACTGAGCACCAAAAGAACATCCGGGATCATTTAATTAATAAAACATTGGAGGAACATTTAATATCACAGAAGGGAGACAACAGACATGGAATGAAAGGCAAGCTGAACAATTTGATGGTTCAGCTTCGAAAGAACTGCAACCATCCTGACCTCTTGGAATCAGTTTTTGATGATTCATACTTTTATCCGCCTATCAAACAATTAGTTGAACAGTGTGGCAAATTCAGCTTGCTGGAGAGGCTATTGGCAAAACTATTTGCTCGGAAGCACAAAGTTCTGGTATTCTCACAGTGGACTAAGGTTTTGGATATAATTGAATACTATTTTGGTGAGAAAGGGATTGAAGTTTGTAGGATTGATGGCAGTGTGAAACTTGATGAAAGAAGAAGACAGATCAACGAGTTCAATGACGTAAACAGCAATTTGAGAATTTTTCTTCTCAGCACAAGGGCAGGTGGACTGGGTATCAACCTCACTGCAGCTGATACCTGTATACTGTATGACAGTGATTGGAACCCTCAAATGGATTTGCAGGCCATGGATAGATGCCACAGGATAGGGCAAACCCGACCTGTTCATGTTTACAGACTTGCAACAGCCCAATCTGTAGAGGGTCGCATGTTGAAGAGAGCTTTCAGTAAATTGAAGCTTGAGCATGTGGTGATTGGGAAAGGGCAGTTCCAGCAGGAGAGAACCAAGCCTAATACTTCGGAGATCCTTGAGGAAGAAGATCTGTTGGCTCTTCTTCGAGATGAAGAAGATGCTGAGGAGAAGTTGATTCAGACAGAAATTAGTGACGAAGATCTTGAGAGGGTTTTGGACCGCAGCGATCTCATTGGTGATCCCTCAGATGATGATGGGAAAATAAAAGCTGCTACTGATGCCTATCCCCTTAAAGGGCCTGGTTGGGAGGTAGTGATACCGCCTAAGAGTGGAGGTGTGCTGTCTACAGTCAATAGTTGA 2295 0.4296 MDVEHEMKNDGTADSPTSVLEDEEICKEEIKVESEDNILLSIDAKNGDSSLISKAMAEEEEKLQETRVKEEDLEREKTNVAVPVVNDTQFTKLDELLTQTQMYSEFLLEKMEDITFNGPENQNEEAVKGKKRGRGGKRKAAAQYNNRKAKKAVAAMLSRSQEGTAPEDANLTEEQRVDKEQAELVPLLTGGKLKPYQIKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWVNEISRFVPSMSSVIYHGDKKERQEIRNKYMSRAIGPKFPIVVTSYEVAMNDAKKYLRHYSWKYVVVDEGHRLKNTKCILLRELRHLPMENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFESWFDLSGKCNNEAQQEELEEKRRVQVLSKLHSILRPFLLRRLKSEVEQMLPRKKEIILYASMTEHQKNIRDHLINKTLEEHLISQKGDNRHGMKGKLNNLMVQLRKNCNHPDLLESVFDDSYFYPPIKQLVEQCGKFSLLERLLAKLFARKHKVLVFSQWTKVLDIIEYYFGEKGIEVCRIDGSVKLDERRRQINEFNDVNSNLRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTRPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIGKGQFQQERTKPNTSEILEEEDLLALLRDEEDAEEKLIQTEISDEDLERVLDRSDLIGDPSDDDGKIKAATDAYPLKGPGWEVVIPPKSGGVLSTVNS* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01856 764 MobiDBLite consensus disorder prediction 1 20 - -
Eupl03g01856 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 684 IPR001650 -
Eupl03g01856 764 FunFam Chromatin complex subunit A 106 433 662 - -
Eupl03g01856 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 373 IPR014001 -
Eupl03g01856 764 MobiDBLite consensus disorder prediction 119 144 - -
Eupl03g01856 764 Gene3D - 161 422 IPR038718 -
Eupl03g01856 764 Coils Coil 56 76 - -
Eupl03g01856 764 Gene3D - 429 726 IPR027417 -
Eupl03g01856 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 423 IPR027417 -
Eupl03g01856 764 Pfam SNF2-related domain 196 495 IPR000330 GO:0005524|GO:0140658
Eupl03g01856 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 722 IPR027417 -
Eupl03g01856 764 PANTHER SNF2/RAD54 HELICASE FAMILY 37 707 - -
Eupl03g01856 764 SMART ultradead3 189 384 IPR014001 -
Eupl03g01856 764 CDD SF2_C_SNF 516 641 - -
Eupl03g01856 764 SMART helicmild6 547 631 IPR001650 -
Eupl03g01856 764 Pfam Helicase conserved C-terminal domain 518 631 IPR001650 -
Eupl03g01856 764 FunFam ATP-dependent DNA helicase DDM1 187 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01856 Eupl-Chr3 46859477 46868412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01856 209 680 RAD5 or RAD16-like Gene Family AT3G16600 25.952 3.80e-33 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl03g01856 SNF2_N 1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01856 K19001 - nnu:104601884 1238.79