Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01852 ATGCTTCCTCCAGTTTCTTCTCCTACTGCTCCTTATTTGGATGGCCGATCCTCACTTGCCGTCTTCTGTGTCGTTGTCACCCTTGTTATCCTTATTGTTATCCTTTATTTACTAAAAAAACGCAGGAAACACAGTCATGAACGACGCCAAAGTATGAGAAACAGTGATCTGGAAAGAGGAGGAGGGGGTCAATGCAGCTTCGAAGTAGCCACACAAAATTCTCAACAGCGAAACTATGAACGTGATGATGAGGCATCGGAGTGTGCCATCTGCTTGGATGGTTTTGAAGAAGGTGAGCCGTGCAAGGTTCTTATCAGGTGCAACCACGCCTTCCATGGGGCCTGTGTGAATCATTGGTTGATGTTAAATCCGACGTGCCCGATTTGCCGGACTTGTATTTGA 402 0.4652 MLPPVSSPTAPYLDGRSSLAVFCVVVTLVILIVILYLLKKRRKHSHERRQSMRNSDLERGGGGQCSFEVATQNSQQRNYERDDEASECAICLDGFEEGEPCKVLIRCNHAFHGACVNHWLMLNPTCPICRTCI* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01852 133 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Eupl03g01852 133 SUPERFAMILY RING/U-box 87 133 - -
Eupl03g01852 133 SMART ring_2 88 129 IPR001841 -
Eupl03g01852 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 132 - -
Eupl03g01852 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 133 IPR013083 -
Eupl03g01852 133 Pfam Ring finger domain 87 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01852 Eupl-Chr3 46821950 46822351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01852 82 130 C3H Transcription Factor Family AT3G10910 51.020 9.15e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01852 - - jre:109010503 76.2553