Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01849 ATGGGAGACTACAACGACGCTTTTATGCGCAGCAGAGACGCGGCCGTGCAGGCTCGCACGAAAGCGCAGAATCGCGCGAACGTTCTTCAGTTGAAACTGATTGGGCAGAGTCATCCAACTGGACTTACATCCAACCTTTTGAAGCTTTTCGAGCCCCGACCTCCATTGGAGTATAAACCGCCTCCTGAGAAAAGGAGTTGCCCACCATATACAGGAATGGCACAATTTGTGAGCAGCTTCGCTGAGCCGGGAGACCCTGAATACACTCCACCTGTGCAAAAGGGTGAAACTCCAACTCAAAAAAAGGCTAGAATTCACAAGTTACGACTGGAAGAGGGTGCTAAAAAAGCTGCCGAGGAATTTGAGAAATATGATCCCTCTAATGATCCAAATATATCGGGAGATCCTTACAAGACGTTGTTTGTAGCAAGGCTTAATTATGAGACAACGGAGCACAGAATCAAAAGGGAGTTTGAAGCTTATGGGCCAATCAAGCGGGTTCATATGATAACAGATAAAGTGACAAATAAACCTAGAGGCTATGCGTTCATTGAGTACATGCATACAAGGGATATGAAAGCTGCATACAAACAGGCTGATGGAAGGAAGTTGGATAACAGGAGAGTGCTTGTGGATGTCGAACGCGGTAGAACTGTGCCAAATTGGCGACCTCGTAGACTGGGGGGTGGACTTGGATCAACCAGGGTTGGAGGTGAAGAAGTTAATCAGAAGTATTCTGGCAGAGAGCCACAGCAGATGGCTTCAGGAGGACCACCCCAGTCTGAGGAGCCAAGGGTCCAAGAGGATCGTCATGACCGGGAGAGGGAGAAGTCCCGGGAGAGGGGAAGGGATAAAGATAAGGAACGTGAGAAGTCCCGGGAGCGCTCCCATGACAGGATGCGGGATCGCGATCCGAGAGATGAGAGACACCACAGAGATCGTGACAGGAATAGAGACAGGGTTAGGGAGAGGGGCCGCGGGCGTGACCGTGATAGAACACGCGATCGGGATCGTGGTCGTGACCACGACAGGGACCGAGATCGCGGTCATGATCGCCCCCGAGAGAGGGACAGGGATTACAAGCGCGGGGACCCTGACCACGATCGTGGGCGTTCACGTGACAGGGATTACGAGCGTGGGGACCCAGACCACGACCGTGTGGAGCCAAAGCTCGAAAGAGACCGCCATGCTGAAAAGGACAGGGACTATGAGCATGACCTTGAACAGTATGAGCAAGTCGAGCCTGGGCATGGTTATGGGCACCCAGAGCCTGACCACGATCTTGAGCATTACGATCATGATCTCGAGCATGATCATGACCGCTACGATCAGATGGAGCCTGAGGATTACCAATATGATCATGTAACTTTTGAGTCACAGGGGAGGGGAAGAACTAGGGAACGGGAACGGGAACGAGACTATCAGCGCACTGAGAGGTCACTTTCACATGAATATGAACACTAG 1464 0.5164 MGDYNDAFMRSRDAAVQARTKAQNRANVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEYKPPPEKRSCPPYTGMAQFVSSFAEPGDPEYTPPVQKGETPTQKKARIHKLRLEEGAKKAAEEFEKYDPSNDPNISGDPYKTLFVARLNYETTEHRIKREFEAYGPIKRVHMITDKVTNKPRGYAFIEYMHTRDMKAAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGSTRVGGEEVNQKYSGREPQQMASGGPPQSEEPRVQEDRHDREREKSRERGRDKDKEREKSRERSHDRMRDRDPRDERHHRDRDRNRDRVRERGRGRDRDRTRDRDRGRDHDRDRDRGHDRPRERDRDYKRGDPDHDRGRSRDRDYERGDPDHDRVEPKLERDRHAEKDRDYEHDLEQYEQVEPGHGYGHPEPDHDLEHYDHDLEHDHDRYDQMEPEDYQYDHVTFESQGRGRTRERERERDYQRTERSLSHEYEH* 488
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01849 487 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Eupl03g01849 487 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Eupl03g01849 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Eupl03g01849 487 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Eupl03g01849 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Eupl03g01849 487 MobiDBLite consensus disorder prediction 263 487 - -
Eupl03g01849 487 Gene3D - 125 250 IPR012677 -
Eupl03g01849 487 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 337 - -
Eupl03g01849 487 SMART rrm1_1 139 212 IPR000504 GO:0003723
Eupl03g01849 487 MobiDBLite consensus disorder prediction 220 487 - -
Eupl03g01849 487 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl03g01849 Eupl-Chr3 46779507 46791275 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01849 140 213 C2H2 Transcription Factor Family AT2G19380 28.378 6.22e-06 47.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01849 K11093 - ming:122074839 555.829