Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01827 ATGACGACTCGAATCGCTCCAGGCGTTGGAGCGAACCTACTCGGTCAGCACTCCGCAGAGAGGAACCAAGAAGCCACTTCTTATGTCGGCAATCTCGACCCTCAGGTCACGGAGGAGTTACTTTGGGAGTTGTTTGTCCAAGCAGGCCCTGTTGTTAATGTTTATGTACCAAAAGATAGAGTGACAAATCTCCATCAAGGATATGGGTTTGTGGAGTTCCGCAGTGAAGAAGACGCTGACTATGCAATCAAGGTTTTGAACATGATCAAACTTTATGGGAAGCCAATACGTGTAAATAAGGCCTCTCAAGACAAAAAGAGCTTGGATGTTGGAGCAAATCTTTTTGTTGGAAATCTTGACCCTGATGTGGATGAAAAACTTTTGTATGATACTTTCAGTGCATTTGGAGTCATCGTCACAAATCCTAAGATAATGAGAGATCCTGAGACTGGAAATTCTCGTGGTTTTGGCTTCATTAGCTATGATTCTTTTGAGACATCTGATGGAGCTATTGAGGCCATGAATGGTCAATATCTTTGTAACCGTCAAATAACGGTGTCCTATGCCTACAAAAAAGACACCAAAGGGGAACGTCATGGTACTCCTGCGGAGAGAGTCCTGGCTGCAAGCAATCCCGGTGCCCAGAAAAACAGGCCCCACACCTTGTTTGCGAGTGGACCACCCACACTTCCCAATGGTACTCAATCCAATGGTACCATGGGTGCACCAATGCCTCCCAGGCCTTTTGCGAATGGCGCTGTTCCTCATGGGCAAATTCCTCCACTTCGTCCTCCACCCCCGCAAAGTGGGATCTTCCCACCTCCTATGCAGCTCGCAGGGCCTCCATCTTGGCCAGGTCAACCACAGCAACAAGGCCAAATGATTGCACCACTTGTCATGCCGCCGCCACCACTTCAGCAGTTCAGACCTTCTGTCAGACCACCTCCGCCTAATATGCCACCACCTCCACCTCCACAGGCAGCTGGGGTTCTTTCAAGGCCTCCACCACCACCCATGGGGATGAATGCACCACCACCTGTTTGGCGGCCGCTCCCACCCCCTCAGCAACTGGCTGGGAGGCCCCTCCCTCCACCTCAGATGTTTATGCCACCACCTCCCCCACAGAATGCCCCCCCGCCTCCACCATCCCAATAG 1155 0.5108 MTTRIAPGVGANLLGQHSAERNQEATSYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFETSDGAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPGAQKNRPHTLFASGPPTLPNGTQSNGTMGAPMPPRPFANGAVPHGQIPPLRPPPPQSGIFPPPMQLAGPPSWPGQPQQQGQMIAPLVMPPPPLQQFRPSVRPPPPNMPPPPPPQAAGVLSRPPPPPMGMNAPPPVWRPLPPPQQLAGRPLPPPQMFMPPPPPQNAPPPPPSQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01827 384 CDD RRM1_SF3B4 28 100 IPR034158 -
Eupl03g01827 384 Gene3D - 111 200 IPR012677 -
Eupl03g01827 384 CDD RRM2_SF3B4 111 193 IPR034159 -
Eupl03g01827 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Eupl03g01827 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Eupl03g01827 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Eupl03g01827 384 MobiDBLite consensus disorder prediction 258 282 - -
Eupl03g01827 384 FunFam splicing factor 3B subunit 4 109 200 - -
Eupl03g01827 384 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 378 - -
Eupl03g01827 384 SMART rrm1_1 26 99 IPR000504 GO:0003723
Eupl03g01827 384 SMART rrm1_1 113 187 IPR000504 GO:0003723
Eupl03g01827 384 MobiDBLite consensus disorder prediction 208 384 - -
Eupl03g01827 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Eupl03g01827 384 SUPERFAMILY RNA-binding domain, RBD 28 195 IPR035979 GO:0003676
Eupl03g01827 384 FunFam Splicing factor 3b subunit 4 16 108 - -
Eupl03g01827 384 MobiDBLite consensus disorder prediction 297 384 - -
Eupl03g01827 384 Gene3D - 16 110 IPR012677 -
Eupl03g01827 384 MobiDBLite consensus disorder prediction 227 241 - -
Eupl03g01827 384 PRINTS Proline rich extensin signature 212 228 - -
Eupl03g01827 384 PRINTS Proline rich extensin signature 281 302 - -
Eupl03g01827 384 PRINTS Proline rich extensin signature 352 377 - -
Eupl03g01827 384 PRINTS Proline rich extensin signature 310 326 - -
Eupl03g01827 384 PRINTS Proline rich extensin signature 253 265 - -
Eupl03g01827 384 PRINTS Proline rich extensin signature 333 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01827 Eupl-Chr3 46482022 46491177 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01827 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 30.303 1.25e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01827 K12831 - nnu:104601632 571.237