Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01821 ATGCCGGACTACAGTGGAAGATACGAAGGTAATGGCGAGGGTTACAACGATTTCAGTTCTTCGCCTCAAATAAAAGGTGAAAGTCATGGCGGCCCCGATAACTATAGTGATTCTAAATCTCAGCTTGGTTCTCGTGATTATGTGAGAGAGTCTTCGAAAAGCAGAGAGCGGGAAAGAGAAAAAGGGAGGGATAAAGAAAGGGACAGGGACAGGGACAGGGATCGAGACAAAGATCGCGAACGTCATAACAGAGACCACTACAGGGATCGGAGTGATAGAAGGGAGCGGGGACGAGATAGACCCGACGACGATTTTCACCGGATTCGAGATTACGACAGGCGTAGAGATTACGATAGAGACAGGGATGGGCGGCATAAACATAGGTCTCGATCTCGTTCAAAGGGTACATCTGATCATAGATCAAGGTCTCGTTCACGATCTAAAAGCAAACGGATTAGTGGTTTTGATATGGCTCCTCCTGCATCTGCAATGCTAGCTGGTGCTGCTGCTGCTGCAGGTCAAATGACTGGGACAACTCCTACCATTCCTGGAATGTTTCCAAATATGTTCCCGTTAGCGGCTGGACAGCAGTTTGGAACCCTGCCCGTGATGCCAGTTCAGGCTATGACGCAGCAGGCTACACGACATGCTCGGCGGGTATATGTTGGTGGCCTCTCTCCCACAGCTAATGAACAGTCTGTGGCAACCTTTTTCAGCCAGGTTATGTCCGCAATTGGAGGAAACACTGCAGGTCCAGGGGATGCTGTTGTTAATGTATACATAAACCATGAAAAGAAGTTTGCTTTTGTAGAGATGAGGTCTGTTGAGGAGGCCAGTAATGCAATGGCGTTGGACGGTATCATTTTTGAGGGAGCACCAGTGAAGGTGAGGAGGCCTAGTGATTACAACCCTTCTCTTGCTGCAGCACTTGGCCCAAGTCAACCCAATCCCAATCTGAACCTGGCTGCTGTTGGGCTAACACCAGGTTCTGCTGGTGGTCTTGAGGGTCCAGATCGCATCTTTGTGGGTGGGCTCCCTTACTACTTCACAGAAGCACAGATAAGAGAGCTGCTAGAATCCTTTGGGCCTCTTCGGGGTTTTGATCTAGTCAAAGACAGGGAGACAGGGAATTCCAAAGGCTATGCCTTCTGTGTTTACCAGGATCTCTCAGTTACAGACATTGCGTGTGCAGCCCTCAATGGAATCAAAATGGGAGATAAAACTCTCACTGTTAGGCGTGCAAACCAGGGCACAGTCCAGCCCAAACCTGAGCAGGAGAGTGTATTATTACAGGCACAACAGCAGGTGGCGTTGCAGAGGCTCGTGTTCCAAGCTGGTGCCCTTCCTACGAAGGTTGTATGCTTAACGCAGGTGGTTACCGCAGATGAGCTAAAAGACGACGATGAGTATGAAGACATAGTGGAAGATATGAGAGGAGAAGGTGGAAAATATGGTGCATTGGTGAATATTGTCATTCCGCGCCCGAGTTCAAATGGCGAACCGTCTCCAGGAGTTGGCAAGGTGTTCTTGGAGTATTCTGACACGGATGGGTCTGCGAAAGCTCGGGCAGGGCTGAATGGAAGGAAATTTGGTGGGAATCAAGTTGTGGCTGTTTTTTATCCAGAGAATAAGTTCTCTCAAGGGGAGTATGATGGGTAG 1659 0.4919 MPDYSGRYEGNGEGYNDFSSSPQIKGESHGGPDNYSDSKSQLGSRDYVRESSKSREREREKGRDKERDRDRDRDRDKDRERHNRDHYRDRSDRRERGRDRPDDDFHRIRDYDRRRDYDRDRDGRHKHRSRSRSKGTSDHRSRSRSRSKSKRISGFDMAPPASAMLAGAAAAAGQMTGTTPTIPGMFPNMFPLAAGQQFGTLPVMPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTVQPKPEQESVLLQAQQQVALQRLVFQAGALPTKVVCLTQVVTADELKDDDEYEDIVEDMRGEGGKYGALVNIVIPRPSSNGEPSPGVGKVFLEYSDTDGSAKARAGLNGRKFGGNQVVAVFYPENKFSQGEYDG* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01821 552 Gene3D - 213 314 IPR012677 -
Eupl03g01821 552 SMART rrm1_1 458 539 IPR000504 GO:0003723
Eupl03g01821 552 SMART rrm1_1 219 297 IPR000504 GO:0003723
Eupl03g01821 552 SMART rrm1_1 339 412 IPR000504 GO:0003723
Eupl03g01821 552 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 48 550 IPR006529 GO:0003723|GO:0005634|GO:0006397
Eupl03g01821 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 416 IPR000504 GO:0003723
Eupl03g01821 552 CDD RRM3_U2AF65 450 538 - -
Eupl03g01821 552 Gene3D - 447 551 IPR012677 -
Eupl03g01821 552 MobiDBLite consensus disorder prediction 43 124 - -
Eupl03g01821 552 SUPERFAMILY RNA-binding domain, RBD 218 303 IPR035979 GO:0003676
Eupl03g01821 552 MobiDBLite consensus disorder prediction 14 42 - -
Eupl03g01821 552 Gene3D - 329 434 IPR012677 -
Eupl03g01821 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 409 IPR000504 GO:0003723
Eupl03g01821 552 FunFam U2 snRNP auxiliary factor large subunit 315 428 - -
Eupl03g01821 552 CDD RRM1_U2AF65 217 299 - -
Eupl03g01821 552 FunFam U2 snRNP auxiliary factor large subunit 213 314 - -
Eupl03g01821 552 CDD RRM2_U2AF65 338 414 - -
Eupl03g01821 552 SUPERFAMILY RNA-binding domain, RBD 339 543 IPR035979 GO:0003676
Eupl03g01821 552 PANTHER RNA-BINDING PROTEIN 41 550 - -
Eupl03g01821 552 MobiDBLite consensus disorder prediction 1 158 - -
Eupl03g01821 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 301 IPR000504 GO:0003723
Eupl03g01821 552 FunFam U2 snRNP auxiliary factor large subunit 446 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01821 Eupl-Chr3 46399144 46411841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01821 340 531 Eukaryotic Initiation Factors Gene Family AT1G22760 25.000 4.89e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01821 K12837 - nnu:104588172 765.377