Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01817 ATGCCGATTGAATTAGAGAATTCGTCAGCTATGACTGTTTCTACAGCTTCTGGAGAAGCAAGTGCGTCTTCTTCCGGTAACCAAAAGGCACCGCCATCGATGACTACGAAGAAAAAGAGAAATCTCCCTGGAATGCCAGATCCAGATGCGGAGGTGATCGCTTTGTCGCCAAAAACCCTAATGGCGACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGGTTCCAACGCGATCAGAACCTGCAACTCCACCGCCGCGGTCACAATCTTCCATGGAAGCTCCGGCAGCGAACTAGCAAAGAGGTTCGTAAGCGCGTCTACGTCTGTCCGGAGACTTCGTGCATTCATCACGATCCGTTAAGAGCTTTAGGCGATCTTACGGGAATCAAGAAGCATTTCTGCCGGAAACATGGCGAGAAGAAATGGAAATGCGATAAGTGTTCGAAGAAATACGCTGTTCAATCCGATTGGAAGGCGCATTTGAAGACTTGCGGAACGAGAGAGTACAGATGCGATTGCGGAACTTTGTTCTCTAGGAGAGATAGCTTCATCACACATAGGGCTTTCTGCGATGCGCTAGCGGAGGAGAGCGCAAGAGCTAAGACGGTACCGAGTCCGAATTCGAATTCAGAAGAAGATCCGAAGCTTCAGATTGTTGCTTCTTCTTCGTCTTCTCCGCCGTCTACTGTGAGTTCGGCTGTGTTGCCGATTCAAAACCCAGAGTTGCCGGAGAAACCCGCCGGAATCTTACACCATATCCCTCCAGCCACCTGTGCAAATGGAAGTGGTAGCAGCTCCAGTAGCAGTATGTTTGCAGGCCTCTTGGCATCTTCGACACCTGCGGAAAGTTTACAACTCCAAACTTCTGCTTTTTCCGATTTAATTTGCGCCATGGCGCGTTCAGAAAGCCCAGCCACTCTCGCATCTGGGTCAACTACAGAACCCACATCTCTATGTCTCTCCTCCAACAATGGTTCGATACTCTTTGCAACGGCGCAAGATCGTCGCCAATTCGCCGCACCACCCCAGCCTATAATGTCCGCCACTGCTTTACTTCAGAAAGCGGCGCAGATGGGTGCTGCTGCCACCGGTACATCCTTGCTGCGGGGGTTCGGGATATCAATGAATTCATCTTCGGGGCAGCAAGAGAGTATACAGTGGAATCGACAAATCGAGAATGAGCCTACTCCTGCGGCTCCTGGGCTTGGACTTGACCTTCCTTGCGACGGGGGTGCTGGGTTGACAGAATTGATGATGGGCCCACCTTCGCTGTTTGGTCCGAAACCGACTACGCTCGATTTTCTTGGGTTGGGAATGGGCGGTGGGGGCGCCCCCAAAGGTGGGTTTTCGGCTCTAATCACGTCAATCGGAGGTGGTCTTGATATGGCCGCTGCGTCGTTATCATCCGGGAAGACATGGGAGGGAGCGAATGAAAGAAAGCTCAATAGTTCTGCATTGCCGTAG 1464 0.5171 MPIELENSSAMTVSTASGEASASSSGNQKAPPSMTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPETSCIHHDPLRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHLKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAKTVPSPNSNSEEDPKLQIVASSSSSPPSTVSSAVLPIQNPELPEKPAGILHHIPPATCANGSGSSSSSSMFAGLLASSTPAESLQLQTSAFSDLICAMARSESPATLASGSTTEPTSLCLSSNNGSILFATAQDRRQFAAPPQPIMSATALLQKAAQMGAAATGTSLLRGFGISMNSSSGQQESIQWNRQIENEPTPAAPGLGLDLPCDGGAGLTELMMGPPSLFGPKPTTLDFLGLGMGGGGAPKGGFSALITSIGGGLDMAAASLSSGKTWEGANERKLNSSALP* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01817 487 Gene3D Classic Zinc Finger 46 114 - -
Eupl03g01817 487 Pfam Zinc-finger of C2H2 type 66 88 - -
Eupl03g01817 487 Gene3D Classic Zinc Finger 122 200 - -
Eupl03g01817 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 450 IPR031140 -
Eupl03g01817 487 MobiDBLite consensus disorder prediction 200 233 - -
Eupl03g01817 487 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Eupl03g01817 487 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Eupl03g01817 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Eupl03g01817 487 SMART c2h2final6 142 162 IPR013087 -
Eupl03g01817 487 SMART c2h2final6 66 88 IPR013087 -
Eupl03g01817 487 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Eupl03g01817 487 MobiDBLite consensus disorder prediction 1 48 - -
Eupl03g01817 487 MobiDBLite consensus disorder prediction 7 35 - -
Eupl03g01817 487 MobiDBLite consensus disorder prediction 201 233 - -
Eupl03g01817 487 FunFam protein indeterminate-domain 12-like 45 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01817 Eupl-Chr3 46315681 46319228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01817 1 455 IDZ Gene Family AT5G66730 56.687 2.11e-168 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl03g01817 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01817 K25869 - nnu:104588175 689.108