Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01793 ATGTATCCTTCAGCATGTGTCTACTCTCCGCCTGGTGAAATTGGTTCTAATTGGACTGATGCGGCGCTCTTGCTGTCTTTGGAAGGAATGGTTCGTGGGAATCCTCTCCCCACAAACGTGATTACAGAAGTGAACCCTTACAATGTTTTACCCTGGGATTTGCCTGATAACATTTGGTACTTGTTTAATTCGGAGGACCCTAAAACTACTGGATCTGGATACTGGAAGGTGACGGGGTGCGATCGTAGAATACTTACAAATTCTTCTACCACTGGTTCGAGAACTACTCTTGAATTCTACAAGGGTGAAGCTCCTCATGGAAGCAAAACCCTTTATGTGATGCATGAGTACAGGATAAATCAGAAGGCAAAACATGAGATGGACGAAGCACAGAATTCTAGTTCACTTTCTAGAGTCTTTCTCAATGTTGGCCAAAGTTCAACCCATAATGAACAACATAACCATGCTGGTGCAAATGATGCCAATGTCAATGACATAATGCTGTCAATCATGCTGAATGCTGAAAGAAACAACCACAATTCACAAGATTCCACAAGCAGGTCCCAGGCGAGAAGTAGGGGTGACGTGCGTGGGCCATTGGCAGTCTCCGAGAGACATCTGGGAGGCCAAAGGCCTGATTATCATGTTGAAGACATTAATGAGTTATCCGAAGAAGACTTCTTGGAATTGCTAGATATTCCTAATCCTGAATCAACTTCTTCTAGTTCAGAAAATTCAAGTTGTCTGACTATGTCGTCAGATGAATACTTTGACTCAGATGCCTTGTTGCGAGACATAGAGGCTGGAAATAACCAAGGCATGGAGAGGAAGAATACAGATAGCAAGTTCAATGTCTCTGCATCTCTCAGACCAAATCAGGTGGTTTTCAGTCCAGCATCTTCAGGTTCCCGTCTAGGCTGCAGTAGAAGCAACCTGCCAAGTGAAGTAAACCTTGTACCCGACTCTTCTCTTCTTGCATTTGCTGTTGAGCGGCAACTTCTTGATAGTAAGGATTCAAGGCGCAATGTAGGTGATGCTAATAAAGGCCCTCCAACAAAATCCCAAACTAAGGTGGCATCATCTAACAGCATTCGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGCAGCAGGAACAGATAAGAAAAACAAGGTGGTTGATGGGAGTATGGCAAAGCTTAGGAAGAAATATTGCTGCTTCATGCCATTCTAG 1215 0.4444 MYPSACVYSPPGEIGSNWTDAALLLSLEGMVRGNPLPTNVITEVNPYNVLPWDLPDNIWYLFNSEDPKTTGSGYWKVTGCDRRILTNSSTTGSRTTLEFYKGEAPHGSKTLYVMHEYRINQKAKHEMDEAQNSSSLSRVFLNVGQSSTHNEQHNHAGANDANVNDIMLSIMLNAERNNHNSQDSTSRSQARSRGDVRGPLAVSERHLGGQRPDYHVEDINELSEEDFLELLDIPNPESTSSSSENSSCLTMSSDEYFDSDALLRDIEAGNNQGMERKNTDSKFNVSASLRPNQVVFSPASSGSRLGCSRSNLPSEVNLVPDSSLLAFAVERQLLDSKDSRRNVGDANKGPPTKSQTKVASSNSIRAAAAAAAAAPAAAGTDKKNKVVDGSMAKLRKKYCCFMPF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01793 404 PANTHER NAC TRANSCRIPTION FACTOR 56 26 191 - -
Eupl03g01793 404 MobiDBLite consensus disorder prediction 178 214 - -
Eupl03g01793 404 MobiDBLite consensus disorder prediction 178 192 - -
Eupl03g01793 404 MobiDBLite consensus disorder prediction 338 361 - -
Eupl03g01793 404 Pfam No apical meristem (NAM) protein 20 119 IPR003441 GO:0003677|GO:0006355
Eupl03g01793 404 ProSiteProfiles NAC domain profile. 9 142 IPR003441 GO:0003677|GO:0006355
Eupl03g01793 404 SUPERFAMILY NAC domain 17 141 IPR036093 GO:0003677|GO:0006355
Eupl03g01793 404 Gene3D NAC domain 19 145 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01793 Eupl-Chr3 46001406 46009126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01793 5 164 NAC Transcription Factor Family AT1G65910 32.203 1.36e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl03g01793 NAM 7.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01793 - - nnu:104595768 319.316