Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01786 ATGCTTCCGTGGTTACAGAAAAGGCATTTGAAGATCAAGGGTTTGGAGATGGCCAGTGGTTTTGGGGATTCAACCAGCAATTCGCCCCTAAGCCCTTCTTGCTCAGGCAGTGATAGCAATGATGCTGGTAATTTCGAGTGCAATATCTGCTTTGAGTTAGCTCAAGACCCAATCGTGACTCTATGTGGTCACCTTTTCTGTTGGCCTTGTCTTTACAAGTGGCTCCATATTCACTCGCATTCCCAGGAGTGCCCGGTTTGTAAGGCCCTCATTCAGGAGGAGAAATTGGTTCCTCTTTATGGCAGAGGAAAGACTCCTACGGATCCAAGATCTAAGTCAATTCCTGGAATTAATATTCCTCATCGGCCGGCAGGTCAGAGGCCCGAAACAGCCCCTCTTCCAGATGCGAACCATTTCCCTCCACATGGGTATGGATTCACCGGGGGATTTGCACCAATGTCAACCGCGAGGTTTGGGAACTTCACACTCTCGGCTTTTGGTGGTCTGATTCCATCCCTATTTAATATTCAGGTGCATGGATACCCTGTTGCTACTGTGTACGGAGCAGCTGCTGGTTTCCCCTTTGGATTTTCAAATTCATTTCACGGGGGACATGCTCATGGGTTCCCGCAGCCTAGACGCCAAGGACAACAGGCTGATTCCTATTTGAAGATGCTGTTTTTTATGGTTGGTGTCTTTGTGATCCTTGCTCTTGTTTGGTCGTAG 726 0.4835 MLPWLQKRHLKIKGLEMASGFGDSTSNSPLSPSCSGSDSNDAGNFECNICFELAQDPIVTLCGHLFCWPCLYKWLHIHSHSQECPVCKALIQEEKLVPLYGRGKTPTDPRSKSIPGINIPHRPAGQRPETAPLPDANHFPPHGYGFTGGFAPMSTARFGNFTLSAFGGLIPSLFNIQVHGYPVATVYGAAAGFPFGFSNSFHGGHAHGFPQPRRQGQQADSYLKMLFFMVGVFVILALVWS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01786 241 SMART ring_2 47 87 IPR001841 -
Eupl03g01786 241 ProSiteProfiles Zinc finger RING-type profile. 47 88 IPR001841 -
Eupl03g01786 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 104 IPR013083 -
Eupl03g01786 241 MobiDBLite consensus disorder prediction 101 124 - -
Eupl03g01786 241 SUPERFAMILY RING/U-box 44 100 - -
Eupl03g01786 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 35 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Eupl03g01786 241 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 31 101 - -
Eupl03g01786 241 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Eupl03g01786 241 CDD RING-HC_AtRMA-like 45 89 - -
Eupl03g01786 241 Pfam Zinc finger, C3HC4 type (RING finger) 45 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01786 Eupl-Chr3 45885716 45887428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01786 37 240 C3H Transcription Factor Family AT2G23780 59.434 2.33e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01786 K10666 - nnu:104590139 419.468