Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01778 ATGGATACTGTTGCAGTTTCTTTCCCCCCTTTATGGATATCAATATGGAAGAATGTGAACTTCAAATCTGCGTATGAAAATCAAGCCGGCAAAATTTTGTCAGACCATGAGCAGGTAACGTCTCGCATTATGGGCTGGCTGAACAAAATTTTTAAAGGTTCCAGCCATAAAATTTCAGAAGGGCAATATCAGGGGAAACATGGAGATGAAAGGGTTTGGAACGAACCTTCTAGTTCAGTGGATGCATGGTCGGAGTTTGAGAATGAAGATATAGATCGTGCCATTGCTCTTTCCCTTTCAGAAGAAGAGCAGAAAGGGAAAAATGTAATTGATAATGGATCTCATGTGGAGGAAGATGAACAATTTGCGCGAGCTCTACAAGAAAGTTTAAACATGGAGTCTCCTCCTCGTTCTGAAAATGGCAATATGTATCAACCTATACCATACCCCTTTTCGACAGGGTTCAGGATTTGTGCCGGTTGCAATACTGAGATTGGGCATGGACGGTTTTTGAGTTGCATGGGTGGAGTTTGGCATCCGGAATGTTTTCGTTGCCATGCTTGCAATCTGCCCATTTCTGACTATGAGTTCTCTATGTCTGGTGATCACCCTTATCACAAATCTTGTTATAAGGAGCACTATCACCCGAAATGTGATGTTTGCAAGAACTTTATTCCAACAAATATTGCTGGTCTTATTGAATATAGGGCGCATCCTTTCTGGATCCAAAAGTACTGCCCCTCCCATGAGCATGATGGGACTCCACGTTGTTGTAGCTGTGAACGAATGGAGCCAAGAGACACAAAATATGTCACTCTGGATGATGGTAGGAAGCTCTGTCTGGAGTGTCTGGACTCCTCAATCATGGATACCACTGAATGCCAACCACTTTATTTTGATATACAAGAATTTTACGAAGGTTTAAATATGAAAGTGGAGCAGCAAATTCCATTACTCTTGGTTGAGAGAACAGCACTAAATGAGGCCATGGAAGGAGAAAAGAACGGTCATCATCACATGCCTGAGACTAGAGGGCTGTGCTTGTCAGAGGAACAGACAGTCAGCACTATTTCAAGGAGGCCAAGGATAGGAGCAGGAAACAGAATCATGGACATGATAACAGAGCCGCGTAGGCTGATCCGTCGTTGCGAAGTGACAGCCATTCTCATTTTGTATGGCCTTCCTAGATTGCTGACTGGGTCTATCCTGGCTCATGAGATGATGCATGCATGGTTGCGGCTTAAAGGTTTTCGCACTCTTAGTCCAGATGTCGAAGAAGGCATCTGCCAGGTACTAGCTCACATGTGGCTGGATTCAGAGATCATATCAGGTTCTGGTAGTAATGTTGCGTCAACTTCATCCTCCTCTTCTGCTTCCACGTCGTCAAAGAAGGGTACACGATCTCAATTCGAGAGGAAGCTCGGGGACTTTTTCAAACACCAGATTGAATCCGATACTTCACCAGCATACGGAGATGGGTTTAGAGCTGGTAACCAAGCCGTGCTCAAGTACGGCCTCCGGCGAACTCTCGACCATATTGAGTTGACAGGGAGCTTTCCATACTGA 1566 0.4464 MDTVAVSFPPLWISIWKNVNFKSAYENQAGKILSDHEQVTSRIMGWLNKIFKGSSHKISEGQYQGKHGDERVWNEPSSSVDAWSEFENEDIDRAIALSLSEEEQKGKNVIDNGSHVEEDEQFARALQESLNMESPPRSENGNMYQPIPYPFSTGFRICAGCNTEIGHGRFLSCMGGVWHPECFRCHACNLPISDYEFSMSGDHPYHKSCYKEHYHPKCDVCKNFIPTNIAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRDTKYVTLDDGRKLCLECLDSSIMDTTECQPLYFDIQEFYEGLNMKVEQQIPLLLVERTALNEAMEGEKNGHHHMPETRGLCLSEEQTVSTISRRPRIGAGNRIMDMITEPRRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGFRTLSPDVEEGICQVLAHMWLDSEIISGSGSNVASTSSSSSASTSSKKGTRSQFERKLGDFFKHQIESDTSPAYGDGFRAGNQAVLKYGLRRTLDHIELTGSFPY* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01778 521 MobiDBLite consensus disorder prediction 447 468 - -
Eupl03g01778 521 CDD LIM 185 260 - -
Eupl03g01778 521 CDD LIM_DA1 158 210 - -
Eupl03g01778 521 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 183 - -
Eupl03g01778 521 SMART lim_4 157 209 IPR001781 -
Eupl03g01778 521 Pfam Protein DA1 307 515 IPR022087 -
Eupl03g01778 521 MobiDBLite consensus disorder prediction 447 465 - -
Eupl03g01778 521 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Eupl03g01778 521 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 86 105 IPR003903 -
Eupl03g01778 521 Pfam LIM domain 158 211 IPR001781 -
Eupl03g01778 521 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Eupl03g01778 521 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 239 - -
Eupl03g01778 521 FunFam Protein DA1-related 1 152 211 - -
Eupl03g01778 521 PANTHER PROTEIN DA1-RELATED 2 46 521 IPR045218 -
Eupl03g01778 521 SMART uim 86 105 IPR003903 -
Eupl03g01778 521 SMART uim 117 136 IPR003903 -
Eupl03g01778 521 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Eupl03g01778 521 Gene3D Cysteine Rich Protein 153 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01778 Eupl-Chr3 45796263 45807202 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl03g01778 DA1-like 1e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01778 - - tss:122661919 898.656