Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl03g01771 | ATGGGGGATTACACGAGCATCGACGAAGAGGATTACTCTTCTGATCAAGATTCACTCGACGGGCTCGAGAACGAAGAAGATGAGTTTCGATCGCCTCGGTGCGGTCAGCCGTGTAAGGTAATCACAAAAGAATCTCTTTTGGCAGCACAGAGGGAAGATTTGTGTAGGGTAATGGAATTGCTAACACTGAGTGAACAACACTCACGGACTTTACTTATTCATCACCGTTGGGACGTTGAGAAGTTGTTCGAAGTGCTTGTAGAGAAGGGAAAAGATCGATTATTTGCTGAAGCAGGTGTGACTGTGGTTGAGCGTAAAGATCTTGCCTCATCGGTATCTTCATCTTCAGTAACATGCAATGTCTGCATGGAGGACGTTCCTGCCAACAAGGTTACAACAATGGACTGTGGCCACTGCTTTTGCAACAATTGTTGGACAGAACATTTTATTGTAAAAATTAATGAAGGGCGAAGTAAGCGCATTAGGTGCATGGCGCACAAGTGCAACGGTATTTGTGATGAAGCTATTGTCAGAAATCTAGTCAGTACGAGGGATTGTGATCTGGCAGAGCGCTTTGAGCGTTTTCTTCTGGAGTCATATATTGAGGACAATAAAATGGTTAAATGGTGCCCTAGTGTTCCCCACTGTGGAAATGCAATACGTGTTGGGGATGATGAATATTGTGAGGTGGAATGTGCATGTGGGCTACAGTTCTGTTTCAGTTGTTCATTAGAAGCGCACTCGCCTTGTTCGTGCCTGATGTGGCAGCTTTGGACCAAGAAATGCCAGGATGAATCAGAGACAGTTAATTGGATTACAGTCAACACAAAGCCCTGCCCGAAGTGTCACAAACCTGTTGAAAAGAATGGTGGCTGCAACCTAGTGAAATGTATCTGTGGACAAACCTTTTGTTGGTTGTGTGGTGGACCTGCTGGCTGGGAGCACACGTGGACAAGTATCACCGGTCACAGTTGTGGACGCTACAAAGAAGAACAAGAGAAGAAAGCTGAGCATGCAAAGTGGGACCACTATCGAAACGTGCACTATCACAACCACTACAAAGCTCTCGCAGATTCTTTTAAGCTCCAAACAATACAGGATAAGTTATCAATTTCGGAAAGCAAGGATTCCACACAAGATTTTAGTTGGGTAACAAATGGACTCTACAGGCTCTTCAGATCAAGGCGGGTTCTCTCATATTCGTACCCATTTGCATTTTACATGTTTGGGGATGACCTGTTCAAGGATGAGATGACAGAAGAGGAAAGGAAACTAAAACAACGCCTATTTGAGGACCAGCAGCAGCAACTCGAAGCAAATGTAGAGAAACTTTCTAAGGTTATAGAGGAGGCGTTTGATCAGTATTCTGAGTATAGAGTCATGGAGATAAGGATGCGAATCATCAATCTGTCTGTGATCATTGATAGACTCTGTAAAAAAATGTATGAATGCATTGAGAACGATTTATTGGGTTCCCTCCAACTGACCATCCACAATATCGCTCCCTACAAATCAGAGGGTGTTGAGAGGGCACTTGAAATTCCTGCCTGGAGCACCAAAAACTACAATACTGATAGCTTTCTGCAGTCACATTCCAGCATAAATGGTACTAGTATTTGA | 1620 | 0.4389 | MGDYTSIDEEDYSSDQDSLDGLENEEDEFRSPRCGQPCKVITKESLLAAQREDLCRVMELLTLSEQHSRTLLIHHRWDVEKLFEVLVEKGKDRLFAEAGVTVVERKDLASSVSSSSVTCNVCMEDVPANKVTTMDCGHCFCNNCWTEHFIVKINEGRSKRIRCMAHKCNGICDEAIVRNLVSTRDCDLAERFERFLLESYIEDNKMVKWCPSVPHCGNAIRVGDDEYCEVECACGLQFCFSCSLEAHSPCSCLMWQLWTKKCQDESETVNWITVNTKPCPKCHKPVEKNGGCNLVKCICGQTFCWLCGGPAGWEHTWTSITGHSCGRYKEEQEKKAEHAKWDHYRNVHYHNHYKALADSFKLQTIQDKLSISESKDSTQDFSWVTNGLYRLFRSRRVLSYSYPFAFYMFGDDLFKDEMTEEERKLKQRLFEDQQQQLEANVEKLSKVIEEAFDQYSEYRVMEIRMRIINLSVIIDRLCKKMYECIENDLLGSLQLTIHNIAPYKSEGVERALEIPAWSTKNYNTDSFLQSHSSINGTSI* | 540 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl03g01771 | 539 | CDD | Rcat_RBR_ARI1-like | 273 | 326 | - | - | |
| Eupl03g01771 | 539 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 50 | 352 | IPR031127 | GO:0004842|GO:0016567 | |
| Eupl03g01771 | 539 | FunFam | RBR-type E3 ubiquitin transferase | 113 | 204 | - | - | |
| Eupl03g01771 | 539 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 204 | IPR013083 | - | |
| Eupl03g01771 | 539 | ProSiteProfiles | TRIAD supradomain profile. | 115 | 329 | IPR044066 | - | |
| Eupl03g01771 | 539 | CDD | BRcat_RBR_ANKIB1 | 197 | 261 | - | - | |
| Eupl03g01771 | 539 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Eupl03g01771 | 539 | FunFam | RBR-type E3 ubiquitin transferase | 248 | 490 | - | - | |
| Eupl03g01771 | 539 | SUPERFAMILY | RING/U-box | 260 | 317 | - | - | |
| Eupl03g01771 | 539 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Eupl03g01771 | 539 | Pfam | Ariadne domain | 329 | 536 | IPR045840 | - | |
| Eupl03g01771 | 539 | Gene3D | - | 248 | 490 | - | - | |
| Eupl03g01771 | 539 | Pfam | IBR domain, a half RING-finger domain | 190 | 252 | IPR002867 | GO:0008270 | |
| Eupl03g01771 | 539 | CDD | RING-HC_RBR_TRIAD1 | 118 | 169 | - | - | |
| Eupl03g01771 | 539 | SUPERFAMILY | RING/U-box | 114 | 202 | - | - | |
| Eupl03g01771 | 539 | SMART | ibrneu5 | 190 | 252 | IPR002867 | GO:0008270 | |
| Eupl03g01771 | 539 | SMART | ibrneu5 | 260 | 325 | IPR002867 | GO:0008270 | |
| Eupl03g01771 | 539 | ProSiteProfiles | Zinc finger RING-type profile. | 119 | 167 | IPR001841 | - | |
| Eupl03g01771 | 539 | SUPERFAMILY | RING/U-box | 190 | 258 | - | - | |
| Eupl03g01771 | 539 | Coils | Coil | 415 | 454 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl03g01771 | Eupl-Chr3 | 45685730 | 45692420 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl03g01771 | 58 | 521 | ARIADNE family | AT2G16090 | 70.339 | 0.0 | 685 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl03g01771 | K11968 | - | nnu:104595795 | 862.062 |