Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01757 ATGACACCAGTTAATTCTTCCGAATACGAATTCGAATGGGGCCCATCTCCGGCTACACTCGAGCAATCTCCGTCAAAACTCCCGGTTGGTTTCAGCCCACCTTTAATTGCCATGGTCGTCGTCGTCGCCACCGCCTTCCTTATCGTCACCTACTTCCGCCTCATCTCCCACCACCTCCTCCCTCCCGTCATCCGTCTCCTCCGTCGGTGGCGCCGCCGATGGAGACGGTGGCGTCATCGTCGCTCCTACGACTCTTCCGCTGGCGACATCGAATCACCTCCCCCTAACGCCATGTTCGAGTCTACCACTGCCTTTCACTTCCTCTCTCCTTACGGCCTCGATGAGGCGGTGATCAAAACGATCCCTCTCTCCGTCTACACCACCAAAGGCAGCAAAAAAGGCTTCCTTGACGGCAGCCGTGACTGTGCCGTTTGTCTTCTCGAGTTCGAAGAAAACGAATACGTCCGTACACTCCCCGTTTGCGCCCACGCCTTCCATGTCGACTGCATCGATATATGGCTCAGATCTCACGCTAACTGTCCCCTCTGCCGTGCCGTAATACTCCGTCCTGAATCTCCGTTTATTCCATTAATGGCCGCGCGAATCCGGCCGAGCCTCGATGACGGGGTGTTAGGAACTATCCTTCTCGAACAGCGAAGTGCAGGAGTGCCGGAATCTGATACATATACACCGAGCGCGGAGATCGTACCTTCCATCGAGGAGGCATCGCCAAGAAGATATGAGAGTGATGATCGGTTCAACGGTCGTGATTTCCTGTTAAAACGATCCTATTCGTTTGGATTTGAGCGGAACTTAGCAGCGGATCGGTTGGTTTTGGAGGCGGCGACGGCGTCGCCGTGGAGATACCGTCGGGGGAGTTTCTGGAGCAGACGGCCTTCACCGTTTAGTTCGTTAGCAAAACCTAGGGTTTTCTCGTTCCGTTCCTACAGAGGCATGAAATCTCCGTTCTTCCGACGGAGAGGATTCTTTCCGTTGTCGGAATCGAACGTCAGATATGGCAGCGGTGGTTCATCGCGACGGAGCAAGTCGTTGACTAGTCCGATCTTCATGAGGTCGTCGGCGGCGATGGCGTTCTCGTCTAGTCGGCTTAGGTGCGGAGATCCCGAGGCACTGCTATCGCCGGAGAGGTTGAATCGACGGTGGCGAGGTTGA 1173 0.5533 MTPVNSSEYEFEWGPSPATLEQSPSKLPVGFSPPLIAMVVVVATAFLIVTYFRLISHHLLPPVIRLLRRWRRRWRRWRHRRSYDSSAGDIESPPPNAMFESTTAFHFLSPYGLDEAVIKTIPLSVYTTKGSKKGFLDGSRDCAVCLLEFEENEYVRTLPVCAHAFHVDCIDIWLRSHANCPLCRAVILRPESPFIPLMAARIRPSLDDGVLGTILLEQRSAGVPESDTYTPSAEIVPSIEEASPRRYESDDRFNGRDFLLKRSYSFGFERNLAADRLVLEAATASPWRYRRGSFWSRRPSPFSSLAKPRVFSFRSYRGMKSPFFRRRGFFPLSESNVRYGSGGSSRRSKSLTSPIFMRSSAAMAFSSSRLRCGDPEALLSPERLNRRWRG* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01757 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 188 IPR013083 -
Eupl03g01757 390 FunFam RING-H2 finger protein ATL65 106 188 - -
Eupl03g01757 390 PANTHER RING-H2 FINGER PROTEIN ATL16 22 192 IPR044600 GO:0016567|GO:0016740
Eupl03g01757 390 SMART ring_2 142 183 IPR001841 -
Eupl03g01757 390 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Eupl03g01757 390 CDD RING-H2_EL5-like 141 184 - -
Eupl03g01757 390 Pfam Ring finger domain 141 184 IPR001841 -
Eupl03g01757 390 SUPERFAMILY RING/U-box 135 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01757 Eupl-Chr3 45543012 45545647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01757 28 387 C3H Transcription Factor Family AT3G18930 52.577 4.11e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01757 - K19041 nnu:104595810 577.015