Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01723 ATGGAACGATACTCTTATATTCTTAGGATCCAGACAAATCTATTTGGAGTCCTTGATACTCTTTGGACCCAGGTTTCCACCCAAGCAAAAGCAATGGTGAAAGATCGCAAGAACAGCTCGTCTTCTTCTTCTAAGATTAGCCCTCACTTCTTCAAAGTATACCTCCCTGCCCTCAGCTCCCAACGACTGAAAATACCAACAGATTATATCAACAACTTCAATGGAGTGGTACCCAAAAAGATGATCCTCAAAGGTCCTCTTGGGAGGTTTTGGCATGTGGAGATGGAAAAAGTGGAAGACGACTTTTTTATCCAGAAGGGGTGGCAGTGTTTTGTGAAAGATCGTTCTTTAAAACTTGGAGAATTTCTACTTTTCAGATATGATGGAAATTCAGTATTCGATGTTAAAATATTTGATAACAGTGGATGTGAAAAGGAAGAGACTTTAGCTTATAGGAACAGTGAAAAGATGATTTGTTTTGTAAAGGAGGAAGCCAAACCAGAAGCAAGGGAAACTGTCAGCAAGCCTACTCGTGGTTTCAAGCGAAAATATTCTGAAAGAAGTTTGAAAAAGATTGGCAAAACTAGTTGTGGGCGATTGAAAAGGACTGCTATTGTCAAGGTTAAAGAAGATGTGGTCTTTGACGCAGCTGATTTTGTTGAACCAAACCATCCGCATTTTACAGCATTTGTACCGTCAAGGCCATATGAATTGAATATCCCAAAACCACAGGTGACTAAAAATGGCCTTAAAATAAAGCCGGAGATGATTCTTCGTGATCCAAGCGGGAAGTCATGGCCTGTGAAAACCTATATCAGGAAGGATGGTCGAATATTGTTCTCTAGGGGGTGGCTGGATTTCCGTAGGGGAAACAACCTGATGAAAGGAGACAAGTGCATCTTTGAGGTTATTAAAGGAAGAGGCAGTAAAGGCAATGTAATGAATGTGCAGATTTTCCAAGCAGGGGCAGGGACAGGGACTTCAACAAGGCTTAGAAACAGGACCAGGAGAGAAACAAGGTGA 1023 0.4135 MERYSYILRIQTNLFGVLDTLWTQVSTQAKAMVKDRKNSSSSSSKISPHFFKVYLPALSSQRLKIPTDYINNFNGVVPKKMILKGPLGRFWHVEMEKVEDDFFIQKGWQCFVKDRSLKLGEFLLFRYDGNSVFDVKIFDNSGCEKEETLAYRNSEKMICFVKEEAKPEARETVSKPTRGFKRKYSERSLKKIGKTSCGRLKRTAIVKVKEDVVFDAADFVEPNHPHFTAFVPSRPYELNIPKPQVTKNGLKIKPEMILRDPSGKSWPVKTYIRKDGRILFSRGWLDFRRGNNLMKGDKCIFEVIKGRGSKGNVMNVQIFQAGAGTGTSTRLRNRTRRETR* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01723 340 Gene3D - 205 322 IPR015300 -
Eupl03g01723 340 SUPERFAMILY DNA-binding pseudobarrel domain 47 143 IPR015300 -
Eupl03g01723 340 SMART B3_2 227 322 IPR003340 GO:0003677
Eupl03g01723 340 SMART B3_2 50 141 IPR003340 GO:0003677
Eupl03g01723 340 PANTHER B3 DOMAIN-CONTAINING 40 306 - -
Eupl03g01723 340 CDD B3_DNA 238 319 IPR003340 GO:0003677
Eupl03g01723 340 Gene3D - 41 143 IPR015300 -
Eupl03g01723 340 ProSiteProfiles B3 DNA-binding domain profile. 223 322 IPR003340 GO:0003677
Eupl03g01723 340 Pfam B3 DNA binding domain 50 140 IPR003340 GO:0003677
Eupl03g01723 340 Pfam B3 DNA binding domain 238 319 IPR003340 GO:0003677
Eupl03g01723 340 CDD B3_DNA 48 139 IPR003340 GO:0003677
Eupl03g01723 340 SUPERFAMILY DNA-binding pseudobarrel domain 221 320 IPR015300 -
Eupl03g01723 340 ProSiteProfiles B3 DNA-binding domain profile. 48 141 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01723 Eupl-Chr3 45030498 45044341 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01723 49 318 B3 DNA Binding Superfamily AT5G66980 29.221 1.18e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl03g01723 B3 3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01723 - - ming:122083486 286.189